/* * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. */ /* * XMLExperiment.java * Copyright (C) 2004 University of Waikato, Hamilton, New Zealand */ package weka.experiment.xml; import java.beans.PropertyDescriptor; import java.io.BufferedInputStream; import java.io.BufferedOutputStream; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.ObjectInputStream; import java.io.ObjectOutputStream; import java.util.Vector; import org.w3c.dom.Element; import weka.core.RevisionUtils; import weka.core.xml.XMLBasicSerialization; import weka.core.xml.XMLDocument; import weka.experiment.Experiment; import weka.experiment.PropertyNode; /** * This class serializes and deserializes an Experiment instance to and * fro XML.
* It omits the options from the Experiment, since these are handled * by the get/set-methods. For the Classifier class with all its * derivative classes it stores only debug and options. * For SplitEvaluator and ResultProducer only the * options are retrieved. The PropertyNode is done manually since * it has no get/set-methods for its public fields.
* Since there's no read-method for m_ClassFirst we always save it * as false. * * @see Experiment#m_ClassFirst * * @author FracPete (fracpete at waikato dot ac dot nz) * @version $Revision: 1.6 $ */ public class XMLExperiment extends XMLBasicSerialization { /** the name of the classFirst property */ public final static String NAME_CLASSFIRST = "classFirst"; /** PropertyNode member */ public final static String NAME_PROPERTYNODE_VALUE = "value"; /** PropertyNode member */ public final static String NAME_PROPERTYNODE_PARENTCLASS = "parentClass"; /** PropertyNode member */ public final static String NAME_PROPERTYNODE_PROPERTY = "property"; /** * initializes the serialization * * @throws Exception if initialization fails */ public XMLExperiment() throws Exception { super(); } /** * generates internally a new XML document and clears also the IgnoreList and * the mappings for the Read/Write-Methods * * @throws Exception if initializing fails */ public void clear() throws Exception { super.clear(); // ignore m_Properties.addIgnored(VAL_ROOT + ".options"); m_Properties.addIgnored(Experiment.class, "options"); // allow m_Properties.addAllowed(weka.classifiers.Classifier.class, "debug"); m_Properties.addAllowed(weka.classifiers.Classifier.class, "options"); // we assume that classes implementing SplitEvaluator also implement OptionHandler m_Properties.addAllowed(weka.experiment.SplitEvaluator.class, "options"); // we assume that classes implementing ResultProducer also implement OptionHandler m_Properties.addAllowed(weka.experiment.ResultProducer.class, "options"); // read/write methods m_CustomMethods.register(this, PropertyNode.class, "PropertyNode"); } /** * enables derived classes to add other properties to the DOM tree, e.g. * ones that do not apply to the get/set convention of beans. * * @param o the object that is serialized into XML * @throws Exception if post-processing fails */ protected void writePostProcess(Object o) throws Exception { Element node; Experiment exp; exp = (Experiment) o; // classfirst node = addElement(m_Document.getDocument().getDocumentElement(), NAME_CLASSFIRST, Boolean.class.getName(), false); node.appendChild(node.getOwnerDocument().createTextNode(new Boolean(false).toString())); // TODO: get-Method for classFirst in Experiment??? } /** * additional post-processing can happen in derived classes after reading * from XML. * * @param o the object to perform some additional processing on * @return the processed object * @throws Exception if post-processing fails */ protected Object readPostProcess(Object o) throws Exception { Element node; Experiment exp; int i; Vector children; exp = (Experiment) o; // classfirst children = XMLDocument.getChildTags(m_Document.getDocument().getDocumentElement()); for (i = 0; i < children.size(); i++) { node = (Element) children.get(i); if (node.getAttribute(ATT_NAME).equals(NAME_CLASSFIRST)) { exp.classFirst(new Boolean(XMLDocument.getContent(node)).booleanValue()); break; } } return o; } /** * adds the given PropertyNode to a DOM structure. * * @param parent the parent of this object, e.g. the class this object is a member of * @param o the Object to describe in XML * @param name the name of the object * @return the node that was created * @throws Exception if the DOM creation fails */ public Element writePropertyNode(Element parent, Object o, String name) throws Exception { Element node; PropertyNode pnode; Vector children; int i; Element child; // for debugging only if (DEBUG) trace(new Throwable(), name); m_CurrentNode = parent; pnode = (PropertyNode) o; node = (Element) parent.appendChild(m_Document.getDocument().createElement(TAG_OBJECT)); node.setAttribute(ATT_NAME, name); node.setAttribute(ATT_CLASS, pnode.getClass().getName()); node.setAttribute(ATT_PRIMITIVE, VAL_NO); node.setAttribute(ATT_ARRAY, VAL_NO); if (pnode.value != null) invokeWriteToXML(node, pnode.value, NAME_PROPERTYNODE_VALUE); if (pnode.parentClass != null) invokeWriteToXML(node, pnode.parentClass.getName(), NAME_PROPERTYNODE_PARENTCLASS); if (pnode.property != null) invokeWriteToXML(node, pnode.property.getDisplayName(), NAME_PROPERTYNODE_PROPERTY); // fix primitive values if ( (pnode.value != null) && (pnode.property != null) && (pnode.property.getPropertyType().isPrimitive())) { children = XMLDocument.getChildTags(node); for (i = 0; i < children.size(); i++) { child = (Element) children.get(i); if (!child.getAttribute(ATT_NAME).equals(NAME_PROPERTYNODE_VALUE)) continue; child.setAttribute(ATT_CLASS, pnode.property.getPropertyType().getName()); child.setAttribute(ATT_PRIMITIVE, VAL_YES); } } return node; } /** * builds the PropertyNode from the given DOM node. * * @param node the associated XML node * @return the instance created from the XML description * @throws Exception if instantiation fails * @see javax.swing.DefaultListModel */ public Object readPropertyNode(Element node) throws Exception { Object result; Object value; String parentClass; String property; Vector children; Element child; int i; Class cls; // for debugging only if (DEBUG) trace(new Throwable(), node.getAttribute(ATT_NAME)); m_CurrentNode = node; result = null; children = XMLDocument.getChildTags(node); value = null; parentClass = null; property = null; for (i = 0; i < children.size(); i++) { child = (Element) children.get(i); if (child.getAttribute(ATT_NAME).equals(NAME_PROPERTYNODE_VALUE)) { if (stringToBoolean(child.getAttribute(ATT_PRIMITIVE))) value = getPrimitive(child); else value = invokeReadFromXML(child); } if (child.getAttribute(ATT_NAME).equals(NAME_PROPERTYNODE_PARENTCLASS)) parentClass = XMLDocument.getContent(child); if (child.getAttribute(ATT_NAME).equals(NAME_PROPERTYNODE_PROPERTY)) property = XMLDocument.getContent(child); } if (parentClass != null) cls = Class.forName(parentClass); else cls = null; if (cls != null) result = new PropertyNode(value, new PropertyDescriptor(property, cls), cls); else result = new PropertyNode(value); return result; } /** * Returns the revision string. * * @return the revision */ public String getRevision() { return RevisionUtils.extract("$Revision: 1.6 $"); } /** * for testing only. if the first argument is a filename with ".xml" * as extension it tries to generate an instance from the XML description * and does a toString() of the generated object. * Otherwise it loads the binary file, saves the XML representation in a * file with the original filename appended by ".xml" and once again in a * binary file with the original filename appended by ".exp". * * @param args the commandline arguments * @throws Exception if something goes wrong, e.g., file not found */ public static void main(String[] args) throws Exception { if (args.length > 0) { // read xml and print if (args[0].toLowerCase().endsWith(".xml")) { System.out.println(new XMLExperiment().read(args[0]).toString()); } // read binary and print generated XML else { // read FileInputStream fi = new FileInputStream(args[0]); ObjectInputStream oi = new ObjectInputStream( new BufferedInputStream(fi)); Object o = oi.readObject(); oi.close(); // print to stdout //new XMLExperiment().write(System.out, o); // write to XML file new XMLExperiment().write(new BufferedOutputStream(new FileOutputStream(args[0] + ".xml")), o); // print to binary file FileOutputStream fo = new FileOutputStream(args[0] + ".exp"); ObjectOutputStream oo = new ObjectOutputStream( new BufferedOutputStream(fo)); oo.writeObject(o); oo.close(); } } } }