1 | /* |
---|
2 | * This program is free software; you can redistribute it and/or modify |
---|
3 | * it under the terms of the GNU General Public License as published by |
---|
4 | * the Free Software Foundation; either version 2 of the License, or |
---|
5 | * (at your option) any later version. |
---|
6 | * |
---|
7 | * This program is distributed in the hope that it will be useful, |
---|
8 | * but WITHOUT ANY WARRANTY; without even the implied warranty of |
---|
9 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
---|
10 | * GNU General Public License for more details. |
---|
11 | * |
---|
12 | * You should have received a copy of the GNU General Public License |
---|
13 | * along with this program; if not, write to the Free Software |
---|
14 | * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. |
---|
15 | */ |
---|
16 | |
---|
17 | /* |
---|
18 | * RemoteExperiment.java |
---|
19 | * Copyright (C) 2000 University of Waikato, Hamilton, New Zealand |
---|
20 | * |
---|
21 | */ |
---|
22 | |
---|
23 | |
---|
24 | package weka.experiment; |
---|
25 | |
---|
26 | import weka.core.FastVector; |
---|
27 | import weka.core.Option; |
---|
28 | import weka.core.OptionHandler; |
---|
29 | import weka.core.Queue; |
---|
30 | import weka.core.RevisionUtils; |
---|
31 | import weka.core.SerializedObject; |
---|
32 | import weka.core.Utils; |
---|
33 | import weka.core.xml.KOML; |
---|
34 | import weka.core.xml.XMLOptions; |
---|
35 | import weka.experiment.xml.XMLExperiment; |
---|
36 | |
---|
37 | import java.io.BufferedInputStream; |
---|
38 | import java.io.BufferedOutputStream; |
---|
39 | import java.io.File; |
---|
40 | import java.io.FileInputStream; |
---|
41 | import java.io.FileOutputStream; |
---|
42 | import java.io.ObjectInputStream; |
---|
43 | import java.io.ObjectOutputStream; |
---|
44 | import java.rmi.Naming; |
---|
45 | import java.util.Enumeration; |
---|
46 | |
---|
47 | import javax.swing.DefaultListModel; |
---|
48 | |
---|
49 | /** |
---|
50 | * Holds all the necessary configuration information for a distributed |
---|
51 | * experiment. This object is able to be serialized for storage on disk.<p> |
---|
52 | * |
---|
53 | * This class is experimental at present. Has been tested using |
---|
54 | * CSVResultListener (sending results to standard out) and |
---|
55 | * DatabaseResultListener (InstantDB + RmiJdbc bridge). <p> |
---|
56 | * |
---|
57 | * Getting started:<p> |
---|
58 | * |
---|
59 | * Start InstantDB (with the RMI bridge) on some machine. If using java2 |
---|
60 | * then specify -Djava.security.policy=db.policy to the |
---|
61 | * virtual machine. Where db.policy is as follows: <br> |
---|
62 | * <pre> |
---|
63 | * grant { |
---|
64 | * permission java.security.AllPermission; |
---|
65 | * }; |
---|
66 | * </pre><p> |
---|
67 | * |
---|
68 | * Start RemoteEngine servers on x machines as per the instructons in the |
---|
69 | * README_Experiment_Gui file. There must be a |
---|
70 | * DatabaseUtils.props in either the HOME or current directory of each |
---|
71 | * machine, listing all necessary jdbc drivers.<p> |
---|
72 | * |
---|
73 | * The machine where a RemoteExperiment is started must also have a copy |
---|
74 | * of DatabaseUtils.props listing the URL to the machine where the |
---|
75 | * database server is running (RmiJdbc + InstantDB). <p> |
---|
76 | * |
---|
77 | * Here is an example of starting a RemoteExperiment: <p> |
---|
78 | * |
---|
79 | * <pre> |
---|
80 | * |
---|
81 | * java -Djava.rmi.server.codebase=file:/path to weka classes/ \ |
---|
82 | * weka.experiment.RemoteExperiment -L 1 -U 10 \ |
---|
83 | * -T /home/ml/datasets/UCI/iris.arff \ |
---|
84 | * -D "weka.experiment.DatabaseResultListener" \ |
---|
85 | * -P "weka.experiment.RandomSplitResultProducer" \ |
---|
86 | * -h rosebud.cs.waikato.ac.nz -h blackbird.cs.waikato.ac.nz -r -- \ |
---|
87 | * -W weka.experiment.ClassifierSplitEvaluator -- \ |
---|
88 | * -W weka.classifiers.bayes.NaiveBayes |
---|
89 | * |
---|
90 | * </pre> <p> |
---|
91 | * The "codebase" property tells rmi where to serve up weka classes from. |
---|
92 | * This can either be a file url (as long as a shared file system is being |
---|
93 | * used that is accessable by the remoteEngine servers), or http url (which |
---|
94 | * of course supposes that a web server is running and you have put your |
---|
95 | * weka classes somewhere that is web accessable). If using a file url the |
---|
96 | * trailing "/" is *most* important unless the weka classes are in a jar |
---|
97 | * file. <p> |
---|
98 | * |
---|
99 | <!-- options-start --> |
---|
100 | * Valid options are: <p/> |
---|
101 | * |
---|
102 | * <pre> -L <num> |
---|
103 | * The lower run number to start the experiment from. |
---|
104 | * (default 1)</pre> |
---|
105 | * |
---|
106 | * <pre> -U <num> |
---|
107 | * The upper run number to end the experiment at (inclusive). |
---|
108 | * (default 10)</pre> |
---|
109 | * |
---|
110 | * <pre> -T <arff file> |
---|
111 | * The dataset to run the experiment on. |
---|
112 | * (required, may be specified multiple times)</pre> |
---|
113 | * |
---|
114 | * <pre> -P <class name> |
---|
115 | * The full class name of a ResultProducer (required). |
---|
116 | * eg: weka.experiment.RandomSplitResultProducer</pre> |
---|
117 | * |
---|
118 | * <pre> -D <class name> |
---|
119 | * The full class name of a ResultListener (required). |
---|
120 | * eg: weka.experiment.CSVResultListener</pre> |
---|
121 | * |
---|
122 | * <pre> -N <string> |
---|
123 | * A string containing any notes about the experiment. |
---|
124 | * (default none)</pre> |
---|
125 | * |
---|
126 | * <pre> |
---|
127 | * Options specific to result producer weka.experiment.RandomSplitResultProducer: |
---|
128 | * </pre> |
---|
129 | * |
---|
130 | * <pre> -P <percent> |
---|
131 | * The percentage of instances to use for training. |
---|
132 | * (default 66)</pre> |
---|
133 | * |
---|
134 | * <pre> -D |
---|
135 | * Save raw split evaluator output.</pre> |
---|
136 | * |
---|
137 | * <pre> -O <file/directory name/path> |
---|
138 | * The filename where raw output will be stored. |
---|
139 | * If a directory name is specified then then individual |
---|
140 | * outputs will be gzipped, otherwise all output will be |
---|
141 | * zipped to the named file. Use in conjuction with -D. (default splitEvalutorOut.zip)</pre> |
---|
142 | * |
---|
143 | * <pre> -W <class name> |
---|
144 | * The full class name of a SplitEvaluator. |
---|
145 | * eg: weka.experiment.ClassifierSplitEvaluator</pre> |
---|
146 | * |
---|
147 | * <pre> -R |
---|
148 | * Set when data is not to be randomized and the data sets' size. |
---|
149 | * Is not to be determined via probabilistic rounding.</pre> |
---|
150 | * |
---|
151 | * <pre> |
---|
152 | * Options specific to split evaluator weka.experiment.ClassifierSplitEvaluator: |
---|
153 | * </pre> |
---|
154 | * |
---|
155 | * <pre> -W <class name> |
---|
156 | * The full class name of the classifier. |
---|
157 | * eg: weka.classifiers.bayes.NaiveBayes</pre> |
---|
158 | * |
---|
159 | * <pre> -C <index> |
---|
160 | * The index of the class for which IR statistics |
---|
161 | * are to be output. (default 1)</pre> |
---|
162 | * |
---|
163 | * <pre> -I <index> |
---|
164 | * The index of an attribute to output in the |
---|
165 | * results. This attribute should identify an |
---|
166 | * instance in order to know which instances are |
---|
167 | * in the test set of a cross validation. if 0 |
---|
168 | * no output (default 0).</pre> |
---|
169 | * |
---|
170 | * <pre> -P |
---|
171 | * Add target and prediction columns to the result |
---|
172 | * for each fold.</pre> |
---|
173 | * |
---|
174 | * <pre> |
---|
175 | * Options specific to classifier weka.classifiers.rules.ZeroR: |
---|
176 | * </pre> |
---|
177 | * |
---|
178 | * <pre> -D |
---|
179 | * If set, classifier is run in debug mode and |
---|
180 | * may output additional info to the console</pre> |
---|
181 | * |
---|
182 | <!-- options-end --> |
---|
183 | * |
---|
184 | * @author Mark Hall (mhall@cs.waikato.ac.nz) |
---|
185 | * @version $Revision: 1.16 $ |
---|
186 | */ |
---|
187 | public class RemoteExperiment |
---|
188 | extends Experiment { |
---|
189 | |
---|
190 | /** for serialization */ |
---|
191 | static final long serialVersionUID = -7357668825635314937L; |
---|
192 | |
---|
193 | /** The list of objects listening for remote experiment events */ |
---|
194 | private FastVector m_listeners = new FastVector(); |
---|
195 | |
---|
196 | /** Holds the names of machines with remoteEngine servers running */ |
---|
197 | protected DefaultListModel m_remoteHosts = new DefaultListModel(); |
---|
198 | |
---|
199 | /** The queue of available hosts */ |
---|
200 | private Queue m_remoteHostsQueue = new Queue(); |
---|
201 | |
---|
202 | /** The status of each of the remote hosts */ |
---|
203 | private int [] m_remoteHostsStatus; |
---|
204 | |
---|
205 | /** The number of times tasks have failed on each remote host */ |
---|
206 | private int [] m_remoteHostFailureCounts; |
---|
207 | |
---|
208 | /** status of the remote host: available */ |
---|
209 | protected static final int AVAILABLE=0; |
---|
210 | /** status of the remote host: in use */ |
---|
211 | protected static final int IN_USE=1; |
---|
212 | /** status of the remote host: connection failed */ |
---|
213 | protected static final int CONNECTION_FAILED=2; |
---|
214 | /** status of the remote host: some other failure */ |
---|
215 | protected static final int SOME_OTHER_FAILURE=3; |
---|
216 | |
---|
217 | // protected static final int TO_BE_RUN=0; |
---|
218 | // protected static final int PROCESSING=1; |
---|
219 | // protected static final int FAILED=2; |
---|
220 | // protected static final int FINISHED=3; |
---|
221 | |
---|
222 | /** allow at most 3 failures on a host before it is removed from the list |
---|
223 | of usable hosts */ |
---|
224 | protected static final int MAX_FAILURES=3; |
---|
225 | |
---|
226 | /** Set to true if MAX_FAILURES exceeded on all hosts or connections fail |
---|
227 | on all hosts or user aborts experiment (via gui) */ |
---|
228 | private boolean m_experimentAborted = false; |
---|
229 | |
---|
230 | /** The number of hosts removed due to exceeding max failures */ |
---|
231 | private int m_removedHosts; |
---|
232 | |
---|
233 | /** The count of failed sub-experiments */ |
---|
234 | private int m_failedCount; |
---|
235 | |
---|
236 | /** The count of successfully completed sub-experiments */ |
---|
237 | private int m_finishedCount; |
---|
238 | |
---|
239 | /** The base experiment to split up into sub experiments for remote |
---|
240 | execution */ |
---|
241 | private Experiment m_baseExperiment = null; |
---|
242 | |
---|
243 | /** The sub experiments */ |
---|
244 | protected Experiment [] m_subExperiments; |
---|
245 | |
---|
246 | /** The queue of sub experiments waiting to be processed */ |
---|
247 | private Queue m_subExpQueue = new Queue(); |
---|
248 | |
---|
249 | /** The status of each of the sub-experiments */ |
---|
250 | protected int [] m_subExpComplete; |
---|
251 | |
---|
252 | /** |
---|
253 | * If true, then sub experiments are created on the basis of data sets |
---|
254 | * rather than run number. |
---|
255 | */ |
---|
256 | protected boolean m_splitByDataSet = true; |
---|
257 | |
---|
258 | |
---|
259 | /** |
---|
260 | * Returns true if sub experiments are to be created on the basis of |
---|
261 | * data set.. |
---|
262 | * |
---|
263 | * @return a <code>boolean</code> value indicating whether sub |
---|
264 | * experiments are to be created on the basis of data set (true) or |
---|
265 | * run number (false). |
---|
266 | */ |
---|
267 | public boolean getSplitByDataSet() { |
---|
268 | return m_splitByDataSet; |
---|
269 | } |
---|
270 | |
---|
271 | /** |
---|
272 | * Set whether sub experiments are to be created on the basis of |
---|
273 | * data set. |
---|
274 | * |
---|
275 | * @param sd true if sub experiments are to be created on the basis |
---|
276 | * of data set. Otherwise sub experiments are created on the basis of |
---|
277 | * run number. |
---|
278 | */ |
---|
279 | public void setSplitByDataSet(boolean sd) { |
---|
280 | m_splitByDataSet = sd; |
---|
281 | } |
---|
282 | |
---|
283 | /** |
---|
284 | * Construct a new RemoteExperiment using an empty Experiment as base |
---|
285 | * Experiment |
---|
286 | * @throws Exception if the base experiment is null |
---|
287 | */ |
---|
288 | public RemoteExperiment() throws Exception { |
---|
289 | this(new Experiment()); |
---|
290 | } |
---|
291 | |
---|
292 | /** |
---|
293 | * Construct a new RemoteExperiment using a base Experiment |
---|
294 | * @param base the base experiment to use |
---|
295 | * @throws Exception if the base experiment is null |
---|
296 | */ |
---|
297 | public RemoteExperiment(Experiment base) throws Exception { |
---|
298 | setBaseExperiment(base); |
---|
299 | } |
---|
300 | |
---|
301 | /** |
---|
302 | * Add an object to the list of those interested in recieving update |
---|
303 | * information from the RemoteExperiment |
---|
304 | * @param r a listener |
---|
305 | */ |
---|
306 | public void addRemoteExperimentListener(RemoteExperimentListener r) { |
---|
307 | m_listeners.addElement(r); |
---|
308 | } |
---|
309 | |
---|
310 | /** |
---|
311 | * Get the base experiment used by this remote experiment |
---|
312 | * @return the base experiment |
---|
313 | */ |
---|
314 | public Experiment getBaseExperiment() { |
---|
315 | return m_baseExperiment; |
---|
316 | } |
---|
317 | |
---|
318 | /** |
---|
319 | * Set the base experiment. A sub experiment will be created for each |
---|
320 | * run in the base experiment. |
---|
321 | * @param base the base experiment to use. |
---|
322 | * @throws Exception if supplied base experiment is null |
---|
323 | */ |
---|
324 | public void setBaseExperiment(Experiment base) throws Exception { |
---|
325 | if (base == null) { |
---|
326 | throw new Exception("Base experiment is null!"); |
---|
327 | } |
---|
328 | m_baseExperiment = base; |
---|
329 | setRunLower(m_baseExperiment.getRunLower()); |
---|
330 | setRunUpper(m_baseExperiment.getRunUpper()); |
---|
331 | setResultListener(m_baseExperiment.getResultListener()); |
---|
332 | setResultProducer(m_baseExperiment.getResultProducer()); |
---|
333 | setDatasets(m_baseExperiment.getDatasets()); |
---|
334 | setUsePropertyIterator(m_baseExperiment.getUsePropertyIterator()); |
---|
335 | setPropertyPath(m_baseExperiment.getPropertyPath()); |
---|
336 | setPropertyArray(m_baseExperiment.getPropertyArray()); |
---|
337 | setNotes(m_baseExperiment.getNotes()); |
---|
338 | m_ClassFirst = m_baseExperiment.m_ClassFirst; |
---|
339 | m_AdvanceDataSetFirst = m_baseExperiment.m_AdvanceDataSetFirst; |
---|
340 | } |
---|
341 | |
---|
342 | /** |
---|
343 | * Set the user notes. |
---|
344 | * |
---|
345 | * @param newNotes New user notes. |
---|
346 | */ |
---|
347 | public void setNotes(String newNotes) { |
---|
348 | |
---|
349 | super.setNotes(newNotes); |
---|
350 | m_baseExperiment.setNotes(newNotes); |
---|
351 | } |
---|
352 | |
---|
353 | /** |
---|
354 | * Set the lower run number for the experiment. |
---|
355 | * |
---|
356 | * @param newRunLower the lower run number for the experiment. |
---|
357 | */ |
---|
358 | public void setRunLower(int newRunLower) { |
---|
359 | |
---|
360 | super.setRunLower(newRunLower); |
---|
361 | m_baseExperiment.setRunLower(newRunLower); |
---|
362 | } |
---|
363 | |
---|
364 | /** |
---|
365 | * Set the upper run number for the experiment. |
---|
366 | * |
---|
367 | * @param newRunUpper the upper run number for the experiment. |
---|
368 | */ |
---|
369 | public void setRunUpper(int newRunUpper) { |
---|
370 | |
---|
371 | super.setRunUpper(newRunUpper); |
---|
372 | m_baseExperiment.setRunUpper(newRunUpper); |
---|
373 | } |
---|
374 | |
---|
375 | /** |
---|
376 | * Sets the result listener where results will be sent. |
---|
377 | * |
---|
378 | * @param newResultListener the result listener where results will be sent. |
---|
379 | */ |
---|
380 | public void setResultListener(ResultListener newResultListener) { |
---|
381 | |
---|
382 | super.setResultListener(newResultListener); |
---|
383 | m_baseExperiment.setResultListener(newResultListener); |
---|
384 | } |
---|
385 | |
---|
386 | /** |
---|
387 | * Set the result producer used for the current experiment. |
---|
388 | * |
---|
389 | * @param newResultProducer result producer to use for the current |
---|
390 | * experiment. |
---|
391 | */ |
---|
392 | public void setResultProducer(ResultProducer newResultProducer) { |
---|
393 | |
---|
394 | super.setResultProducer(newResultProducer); |
---|
395 | m_baseExperiment.setResultProducer(newResultProducer); |
---|
396 | } |
---|
397 | |
---|
398 | /** |
---|
399 | * Set the datasets to use in the experiment |
---|
400 | * @param ds the list of datasets to use |
---|
401 | */ |
---|
402 | public void setDatasets(DefaultListModel ds) { |
---|
403 | super.setDatasets(ds); |
---|
404 | m_baseExperiment.setDatasets(ds); |
---|
405 | } |
---|
406 | |
---|
407 | /** |
---|
408 | * Sets whether the custom property iterator should be used. |
---|
409 | * |
---|
410 | * @param newUsePropertyIterator true if so |
---|
411 | */ |
---|
412 | public void setUsePropertyIterator(boolean newUsePropertyIterator) { |
---|
413 | |
---|
414 | super.setUsePropertyIterator(newUsePropertyIterator); |
---|
415 | m_baseExperiment.setUsePropertyIterator(newUsePropertyIterator); |
---|
416 | } |
---|
417 | |
---|
418 | /** |
---|
419 | * Sets the path of properties taken to get to the custom property |
---|
420 | * to iterate over. |
---|
421 | * |
---|
422 | * @param newPropertyPath an array of PropertyNodes |
---|
423 | */ |
---|
424 | public void setPropertyPath(PropertyNode [] newPropertyPath) { |
---|
425 | |
---|
426 | super.setPropertyPath(newPropertyPath); |
---|
427 | m_baseExperiment.setPropertyPath(newPropertyPath); |
---|
428 | } |
---|
429 | |
---|
430 | /** |
---|
431 | * Sets the array of values to set the custom property to. |
---|
432 | * |
---|
433 | * @param newPropArray a value of type Object which should be an |
---|
434 | * array of the appropriate values. |
---|
435 | */ |
---|
436 | public void setPropertyArray(Object newPropArray) { |
---|
437 | super.setPropertyArray(newPropArray); |
---|
438 | m_baseExperiment.setPropertyArray(newPropArray); |
---|
439 | } |
---|
440 | |
---|
441 | |
---|
442 | /** |
---|
443 | * Prepares a remote experiment for running, creates sub experiments |
---|
444 | * |
---|
445 | * @throws Exception if an error occurs |
---|
446 | */ |
---|
447 | public void initialize() throws Exception { |
---|
448 | if (m_baseExperiment == null) { |
---|
449 | throw new Exception("No base experiment specified!"); |
---|
450 | } |
---|
451 | |
---|
452 | m_experimentAborted = false; |
---|
453 | m_finishedCount = 0; |
---|
454 | m_failedCount = 0; |
---|
455 | m_RunNumber = getRunLower(); |
---|
456 | m_DatasetNumber = 0; |
---|
457 | m_PropertyNumber = 0; |
---|
458 | m_CurrentProperty = -1; |
---|
459 | m_CurrentInstances = null; |
---|
460 | m_Finished = false; |
---|
461 | |
---|
462 | if (m_remoteHosts.size() == 0) { |
---|
463 | throw new Exception("No hosts specified!"); |
---|
464 | } |
---|
465 | // initialize all remote hosts to available |
---|
466 | m_remoteHostsStatus = new int [m_remoteHosts.size()]; |
---|
467 | m_remoteHostFailureCounts = new int [m_remoteHosts.size()]; |
---|
468 | |
---|
469 | m_remoteHostsQueue = new Queue(); |
---|
470 | // prime the hosts queue |
---|
471 | for (int i=0;i<m_remoteHosts.size();i++) { |
---|
472 | m_remoteHostsQueue.push(new Integer(i)); |
---|
473 | } |
---|
474 | |
---|
475 | // set up sub experiments |
---|
476 | m_subExpQueue = new Queue(); |
---|
477 | int numExps; |
---|
478 | if (getSplitByDataSet()) { |
---|
479 | numExps = m_baseExperiment.getDatasets().size(); |
---|
480 | } else { |
---|
481 | numExps = getRunUpper() - getRunLower() + 1; |
---|
482 | } |
---|
483 | m_subExperiments = new Experiment[numExps]; |
---|
484 | m_subExpComplete = new int[numExps]; |
---|
485 | // create copy of base experiment |
---|
486 | SerializedObject so = new SerializedObject(m_baseExperiment); |
---|
487 | |
---|
488 | if (getSplitByDataSet()) { |
---|
489 | for (int i = 0; i < m_baseExperiment.getDatasets().size(); i++) { |
---|
490 | m_subExperiments[i] = (Experiment)so.getObject(); |
---|
491 | // one for each data set |
---|
492 | DefaultListModel temp = new DefaultListModel(); |
---|
493 | temp.addElement(m_baseExperiment.getDatasets().elementAt(i)); |
---|
494 | m_subExperiments[i].setDatasets(temp); |
---|
495 | m_subExpQueue.push(new Integer(i)); |
---|
496 | } |
---|
497 | } else { |
---|
498 | for (int i = getRunLower(); i <= getRunUpper(); i++) { |
---|
499 | m_subExperiments[i-getRunLower()] = (Experiment)so.getObject(); |
---|
500 | // one run for each sub experiment |
---|
501 | m_subExperiments[i-getRunLower()].setRunLower(i); |
---|
502 | m_subExperiments[i-getRunLower()].setRunUpper(i); |
---|
503 | |
---|
504 | m_subExpQueue.push(new Integer(i-getRunLower())); |
---|
505 | } |
---|
506 | } |
---|
507 | } |
---|
508 | |
---|
509 | /** |
---|
510 | * Inform all listeners of progress |
---|
511 | * @param status true if this is a status type of message |
---|
512 | * @param log true if this is a log type of message |
---|
513 | * @param finished true if the remote experiment has finished |
---|
514 | * @param message the message. |
---|
515 | */ |
---|
516 | private synchronized void notifyListeners(boolean status, |
---|
517 | boolean log, |
---|
518 | boolean finished, |
---|
519 | String message) { |
---|
520 | if (m_listeners.size() > 0) { |
---|
521 | for (int i=0;i<m_listeners.size();i++) { |
---|
522 | RemoteExperimentListener r = |
---|
523 | (RemoteExperimentListener)(m_listeners.elementAt(i)); |
---|
524 | r.remoteExperimentStatus(new RemoteExperimentEvent(status, |
---|
525 | log, |
---|
526 | finished, |
---|
527 | message)); |
---|
528 | } |
---|
529 | } else { |
---|
530 | System.err.println(message); |
---|
531 | } |
---|
532 | } |
---|
533 | |
---|
534 | /** |
---|
535 | * Set the abort flag |
---|
536 | */ |
---|
537 | public void abortExperiment() { |
---|
538 | m_experimentAborted = true; |
---|
539 | } |
---|
540 | |
---|
541 | /** |
---|
542 | * Increment the number of successfully completed sub experiments |
---|
543 | */ |
---|
544 | protected synchronized void incrementFinished() { |
---|
545 | m_finishedCount++; |
---|
546 | } |
---|
547 | |
---|
548 | /** |
---|
549 | * Increment the overall number of failures and the number of failures for |
---|
550 | * a particular host |
---|
551 | * @param hostNum the index of the host to increment failure count |
---|
552 | */ |
---|
553 | protected synchronized void incrementFailed(int hostNum) { |
---|
554 | m_failedCount++; |
---|
555 | m_remoteHostFailureCounts[hostNum]++; |
---|
556 | } |
---|
557 | |
---|
558 | /** |
---|
559 | * Push an experiment back on the queue of waiting experiments |
---|
560 | * @param expNum the index of the experiment to push onto the queue |
---|
561 | */ |
---|
562 | protected synchronized void waitingExperiment(int expNum) { |
---|
563 | m_subExpQueue.push(new Integer(expNum)); |
---|
564 | } |
---|
565 | |
---|
566 | /** |
---|
567 | * Check to see if we have failed to connect to all hosts |
---|
568 | * |
---|
569 | * @return true if failed to connect to all hosts |
---|
570 | */ |
---|
571 | private boolean checkForAllFailedHosts() { |
---|
572 | boolean allbad = true; |
---|
573 | for (int i = 0; i < m_remoteHostsStatus.length; i++) { |
---|
574 | if (m_remoteHostsStatus[i] != CONNECTION_FAILED) { |
---|
575 | allbad = false; |
---|
576 | break; |
---|
577 | } |
---|
578 | } |
---|
579 | if (allbad) { |
---|
580 | abortExperiment(); |
---|
581 | notifyListeners(false,true,true,"Experiment aborted! All connections " |
---|
582 | +"to remote hosts failed."); |
---|
583 | } |
---|
584 | return allbad; |
---|
585 | } |
---|
586 | |
---|
587 | /** |
---|
588 | * Returns some post experiment information. |
---|
589 | * @return a String containing some post experiment info |
---|
590 | */ |
---|
591 | private String postExperimentInfo() { |
---|
592 | StringBuffer text = new StringBuffer(); |
---|
593 | text.append(m_finishedCount+(m_splitByDataSet |
---|
594 | ? " data sets" |
---|
595 | : " runs") + " completed successfully. " |
---|
596 | +m_failedCount+" failures during running.\n"); |
---|
597 | System.err.print(text.toString()); |
---|
598 | return text.toString(); |
---|
599 | } |
---|
600 | |
---|
601 | /** |
---|
602 | * Pushes a host back onto the queue of available hosts and attempts to |
---|
603 | * launch a waiting experiment (if any). |
---|
604 | * @param hostNum the index of the host to push back onto the queue of |
---|
605 | * available hosts |
---|
606 | */ |
---|
607 | protected synchronized void availableHost(int hostNum) { |
---|
608 | if (hostNum >= 0) { |
---|
609 | if (m_remoteHostFailureCounts[hostNum] < MAX_FAILURES) { |
---|
610 | m_remoteHostsQueue.push(new Integer(hostNum)); |
---|
611 | } else { |
---|
612 | notifyListeners(false,true,false,"Max failures exceeded for host " |
---|
613 | +((String)m_remoteHosts.elementAt(hostNum)) |
---|
614 | +". Removed from host list."); |
---|
615 | m_removedHosts++; |
---|
616 | } |
---|
617 | } |
---|
618 | |
---|
619 | // check for all sub exp complete or all hosts failed or failed count |
---|
620 | // exceeded |
---|
621 | if (m_failedCount == (MAX_FAILURES * m_remoteHosts.size())) { |
---|
622 | abortExperiment(); |
---|
623 | notifyListeners(false,true,true,"Experiment aborted! Max failures " |
---|
624 | +"exceeded on all remote hosts."); |
---|
625 | return; |
---|
626 | } |
---|
627 | |
---|
628 | if ((getSplitByDataSet() && |
---|
629 | (m_baseExperiment.getDatasets().size() == m_finishedCount)) || |
---|
630 | (!getSplitByDataSet() && |
---|
631 | ((getRunUpper() - getRunLower() + 1) == m_finishedCount))) { |
---|
632 | notifyListeners(false,true,false,"Experiment completed successfully."); |
---|
633 | notifyListeners(false,true,true,postExperimentInfo()); |
---|
634 | return; |
---|
635 | } |
---|
636 | |
---|
637 | if (checkForAllFailedHosts()) { |
---|
638 | return; |
---|
639 | } |
---|
640 | |
---|
641 | if (m_experimentAborted && |
---|
642 | (m_remoteHostsQueue.size() + m_removedHosts) == m_remoteHosts.size()) { |
---|
643 | notifyListeners(false,true,true,"Experiment aborted. All remote tasks " |
---|
644 | +"finished."); |
---|
645 | } |
---|
646 | |
---|
647 | if (!m_subExpQueue.empty() && !m_experimentAborted) { |
---|
648 | if (!m_remoteHostsQueue.empty()) { |
---|
649 | int availHost, waitingExp; |
---|
650 | try { |
---|
651 | availHost = ((Integer)m_remoteHostsQueue.pop()).intValue(); |
---|
652 | waitingExp = ((Integer)m_subExpQueue.pop()).intValue(); |
---|
653 | launchNext(waitingExp, availHost); |
---|
654 | } catch (Exception ex) { |
---|
655 | ex.printStackTrace(); |
---|
656 | } |
---|
657 | } |
---|
658 | } |
---|
659 | } |
---|
660 | |
---|
661 | /** |
---|
662 | * Launch a sub experiment on a remote host |
---|
663 | * @param wexp the index of the sub experiment to launch |
---|
664 | * @param ah the index of the available host to launch on |
---|
665 | */ |
---|
666 | public void launchNext(final int wexp, final int ah) { |
---|
667 | |
---|
668 | Thread subExpThread; |
---|
669 | subExpThread = new Thread() { |
---|
670 | public void run() { |
---|
671 | m_remoteHostsStatus[ah] = IN_USE; |
---|
672 | m_subExpComplete[wexp] = TaskStatusInfo.PROCESSING; |
---|
673 | RemoteExperimentSubTask expSubTsk = new RemoteExperimentSubTask(); |
---|
674 | expSubTsk.setExperiment(m_subExperiments[wexp]); |
---|
675 | String subTaskType = (getSplitByDataSet()) |
---|
676 | ? "dataset :" + ((File)m_subExperiments[wexp].getDatasets(). |
---|
677 | elementAt(0)).getName() |
---|
678 | : "run :" + m_subExperiments[wexp].getRunLower(); |
---|
679 | try { |
---|
680 | String name = "//" |
---|
681 | +((String)m_remoteHosts.elementAt(ah)) |
---|
682 | +"/RemoteEngine"; |
---|
683 | Compute comp = (Compute) Naming.lookup(name); |
---|
684 | // assess the status of the sub-exp |
---|
685 | notifyListeners(false,true,false,"Starting " |
---|
686 | +subTaskType |
---|
687 | +" on host " |
---|
688 | +((String)m_remoteHosts.elementAt(ah))); |
---|
689 | Object subTaskId = comp.executeTask(expSubTsk); |
---|
690 | boolean finished = false; |
---|
691 | TaskStatusInfo is = null; |
---|
692 | while (!finished) { |
---|
693 | try { |
---|
694 | Thread.sleep(2000); |
---|
695 | |
---|
696 | TaskStatusInfo cs = (TaskStatusInfo)comp. |
---|
697 | checkStatus(subTaskId); |
---|
698 | if (cs.getExecutionStatus() == TaskStatusInfo.FINISHED) { |
---|
699 | // push host back onto queue and try launching any waiting |
---|
700 | // sub-experiments |
---|
701 | notifyListeners(false, true, false, cs.getStatusMessage()); |
---|
702 | m_remoteHostsStatus[ah] = AVAILABLE; |
---|
703 | incrementFinished(); |
---|
704 | availableHost(ah); |
---|
705 | finished = true; |
---|
706 | } else if (cs.getExecutionStatus() == TaskStatusInfo.FAILED) { |
---|
707 | // a non connection related error---possibly host doesn't have |
---|
708 | // access to data sets or security policy is not set up |
---|
709 | // correctly or classifier(s) failed for some reason |
---|
710 | notifyListeners(false, true, false, cs.getStatusMessage()); |
---|
711 | m_remoteHostsStatus[ah] = SOME_OTHER_FAILURE; |
---|
712 | m_subExpComplete[wexp] = TaskStatusInfo.FAILED; |
---|
713 | notifyListeners(false,true,false,subTaskType |
---|
714 | +" "+cs.getStatusMessage() |
---|
715 | +". Scheduling for execution on another host."); |
---|
716 | incrementFailed(ah); |
---|
717 | // push experiment back onto queue |
---|
718 | waitingExperiment(wexp); |
---|
719 | // push host back onto queue and try launching any waiting |
---|
720 | // sub-experiments. Host is pushed back on the queue as the |
---|
721 | // failure may be temporary---eg. with InstantDB using the |
---|
722 | // RMI bridge, two or more threads may try to create the |
---|
723 | // experiment index or results table simultaneously; all but |
---|
724 | // one will throw an exception. These hosts are still usable |
---|
725 | // however. |
---|
726 | availableHost(ah); |
---|
727 | finished = true; |
---|
728 | } else { |
---|
729 | if (is == null) { |
---|
730 | is = cs; |
---|
731 | notifyListeners(false, true, false, cs.getStatusMessage()); |
---|
732 | } else { |
---|
733 | if (cs.getStatusMessage(). |
---|
734 | compareTo(is.getStatusMessage()) != 0) { |
---|
735 | |
---|
736 | notifyListeners(false, true, false, |
---|
737 | cs.getStatusMessage()); |
---|
738 | } |
---|
739 | is = cs; |
---|
740 | } |
---|
741 | } |
---|
742 | } catch (InterruptedException ie) { |
---|
743 | } |
---|
744 | } |
---|
745 | |
---|
746 | } catch (Exception ce) { |
---|
747 | m_remoteHostsStatus[ah] = CONNECTION_FAILED; |
---|
748 | m_subExpComplete[wexp] = TaskStatusInfo.TO_BE_RUN; |
---|
749 | System.err.println(ce); |
---|
750 | ce.printStackTrace(); |
---|
751 | notifyListeners(false,true,false,"Connection to " |
---|
752 | +((String)m_remoteHosts.elementAt(ah)) |
---|
753 | +" failed. Scheduling " |
---|
754 | +subTaskType |
---|
755 | +" for execution on another host."); |
---|
756 | checkForAllFailedHosts(); |
---|
757 | waitingExperiment(wexp); |
---|
758 | } finally { |
---|
759 | if (isInterrupted()) { |
---|
760 | System.err.println("Sub exp Interupted!"); |
---|
761 | } |
---|
762 | } |
---|
763 | } |
---|
764 | }; |
---|
765 | subExpThread.setPriority(Thread.MIN_PRIORITY); |
---|
766 | subExpThread.start(); |
---|
767 | } |
---|
768 | |
---|
769 | /** |
---|
770 | * Overides the one in Experiment |
---|
771 | * @throws Exception never throws an exception |
---|
772 | */ |
---|
773 | public void nextIteration() throws Exception { |
---|
774 | |
---|
775 | } |
---|
776 | |
---|
777 | /** |
---|
778 | * overides the one in Experiment |
---|
779 | */ |
---|
780 | public void advanceCounters() { |
---|
781 | |
---|
782 | } |
---|
783 | |
---|
784 | /** |
---|
785 | * overides the one in Experiment |
---|
786 | */ |
---|
787 | public void postProcess() { |
---|
788 | |
---|
789 | } |
---|
790 | |
---|
791 | /** |
---|
792 | * Add a host name to the list of remote hosts |
---|
793 | * @param hostname the host name to add to the list |
---|
794 | */ |
---|
795 | public void addRemoteHost(String hostname) { |
---|
796 | m_remoteHosts.addElement(hostname); |
---|
797 | } |
---|
798 | |
---|
799 | /** |
---|
800 | * Get the list of remote host names |
---|
801 | * @return the list of remote host names |
---|
802 | */ |
---|
803 | public DefaultListModel getRemoteHosts() { |
---|
804 | return m_remoteHosts; |
---|
805 | } |
---|
806 | |
---|
807 | /** |
---|
808 | * Set the list of remote host names |
---|
809 | * @param list the list of remote host names |
---|
810 | */ |
---|
811 | public void setRemoteHosts(DefaultListModel list) { |
---|
812 | m_remoteHosts = list; |
---|
813 | } |
---|
814 | |
---|
815 | /** |
---|
816 | * Overides toString in Experiment |
---|
817 | * @return a description of this remote experiment |
---|
818 | */ |
---|
819 | public String toString() { |
---|
820 | String result = m_baseExperiment.toString(); |
---|
821 | |
---|
822 | result += "\nRemote Hosts:\n"; |
---|
823 | for (int i=0;i<m_remoteHosts.size();i++) { |
---|
824 | result += ((String)m_remoteHosts.elementAt(i)) +'\n'; |
---|
825 | } |
---|
826 | return result; |
---|
827 | } |
---|
828 | |
---|
829 | /** |
---|
830 | * Overides runExperiment in Experiment |
---|
831 | */ |
---|
832 | public void runExperiment() { |
---|
833 | int totalHosts = m_remoteHostsQueue.size(); |
---|
834 | // Try to launch sub experiments on all available hosts |
---|
835 | for (int i = 0; i < totalHosts; i++) { |
---|
836 | availableHost(-1); |
---|
837 | } |
---|
838 | } |
---|
839 | |
---|
840 | /** |
---|
841 | * Returns the revision string. |
---|
842 | * |
---|
843 | * @return the revision |
---|
844 | */ |
---|
845 | public String getRevision() { |
---|
846 | return RevisionUtils.extract("$Revision: 1.16 $"); |
---|
847 | } |
---|
848 | |
---|
849 | /** |
---|
850 | * Configures/Runs the Experiment from the command line. |
---|
851 | * |
---|
852 | * @param args command line arguments to the Experiment. |
---|
853 | */ |
---|
854 | public static void main(String[] args) { |
---|
855 | |
---|
856 | try { |
---|
857 | RemoteExperiment exp = null; |
---|
858 | |
---|
859 | // get options from XML? |
---|
860 | String xmlOption = Utils.getOption("xml", args); |
---|
861 | if (!xmlOption.equals("")) |
---|
862 | args = new XMLOptions(xmlOption).toArray(); |
---|
863 | |
---|
864 | Experiment base = null; |
---|
865 | String expFile = Utils.getOption('l', args); |
---|
866 | String saveFile = Utils.getOption('s', args); |
---|
867 | boolean runExp = Utils.getFlag('r', args); |
---|
868 | FastVector remoteHosts = new FastVector(); |
---|
869 | String runHost = " "; |
---|
870 | while (runHost.length() != 0) { |
---|
871 | runHost = Utils.getOption('h', args); |
---|
872 | if (runHost.length() != 0) { |
---|
873 | remoteHosts.addElement(runHost); |
---|
874 | } |
---|
875 | } |
---|
876 | if (expFile.length() == 0) { |
---|
877 | base = new Experiment(); |
---|
878 | try { |
---|
879 | base.setOptions(args); |
---|
880 | Utils.checkForRemainingOptions(args); |
---|
881 | } catch (Exception ex) { |
---|
882 | ex.printStackTrace(); |
---|
883 | String result = "Usage:\n\n" |
---|
884 | + "-l <exp file>\n" |
---|
885 | + "\tLoad experiment from file (default use cli options)\n" |
---|
886 | + "-s <exp file>\n" |
---|
887 | + "\tSave experiment to file after setting other options\n" |
---|
888 | + "\t(default don't save)\n" |
---|
889 | + "-h <remote host name>\n" |
---|
890 | + "\tHost to run experiment on (may be specified more than once\n" |
---|
891 | + "\tfor multiple remote hosts)\n" |
---|
892 | + "-r \n" |
---|
893 | + "\tRun experiment on (default don't run)\n" |
---|
894 | + "-xml <filename | xml-string>\n" |
---|
895 | + "\tget options from XML-Data instead from parameters\n" |
---|
896 | + "\n"; |
---|
897 | Enumeration enm = ((OptionHandler)base).listOptions(); |
---|
898 | while (enm.hasMoreElements()) { |
---|
899 | Option option = (Option) enm.nextElement(); |
---|
900 | result += option.synopsis() + "\n"; |
---|
901 | result += option.description() + "\n"; |
---|
902 | } |
---|
903 | throw new Exception(result + "\n" + ex.getMessage()); |
---|
904 | } |
---|
905 | } else { |
---|
906 | Object tmp; |
---|
907 | |
---|
908 | // KOML? |
---|
909 | if ( (KOML.isPresent()) && (expFile.toLowerCase().endsWith(KOML.FILE_EXTENSION)) ) { |
---|
910 | tmp = KOML.read(expFile); |
---|
911 | } |
---|
912 | else |
---|
913 | // XML? |
---|
914 | if (expFile.toLowerCase().endsWith(".xml")) { |
---|
915 | XMLExperiment xml = new XMLExperiment(); |
---|
916 | tmp = xml.read(expFile); |
---|
917 | } |
---|
918 | // binary |
---|
919 | else { |
---|
920 | FileInputStream fi = new FileInputStream(expFile); |
---|
921 | ObjectInputStream oi = new ObjectInputStream( |
---|
922 | new BufferedInputStream(fi)); |
---|
923 | tmp = oi.readObject(); |
---|
924 | oi.close(); |
---|
925 | } |
---|
926 | if (tmp instanceof RemoteExperiment) { |
---|
927 | exp = (RemoteExperiment)tmp; |
---|
928 | } else { |
---|
929 | base = (Experiment)tmp; |
---|
930 | } |
---|
931 | } |
---|
932 | if (base != null) { |
---|
933 | exp = new RemoteExperiment(base); |
---|
934 | } |
---|
935 | for (int i=0;i<remoteHosts.size();i++) { |
---|
936 | exp.addRemoteHost((String)remoteHosts.elementAt(i)); |
---|
937 | } |
---|
938 | System.err.println("Experiment:\n" + exp.toString()); |
---|
939 | |
---|
940 | if (saveFile.length() != 0) { |
---|
941 | // KOML? |
---|
942 | if ( (KOML.isPresent()) && (saveFile.toLowerCase().endsWith(KOML.FILE_EXTENSION)) ) { |
---|
943 | KOML.write(saveFile, exp); |
---|
944 | } |
---|
945 | else |
---|
946 | // XML? |
---|
947 | if (saveFile.toLowerCase().endsWith(".xml")) { |
---|
948 | XMLExperiment xml = new XMLExperiment(); |
---|
949 | xml.write(saveFile, exp); |
---|
950 | } |
---|
951 | // binary |
---|
952 | else { |
---|
953 | FileOutputStream fo = new FileOutputStream(saveFile); |
---|
954 | ObjectOutputStream oo = new ObjectOutputStream( |
---|
955 | new BufferedOutputStream(fo)); |
---|
956 | oo.writeObject(exp); |
---|
957 | oo.close(); |
---|
958 | } |
---|
959 | } |
---|
960 | |
---|
961 | if (runExp) { |
---|
962 | System.err.println("Initializing..."); |
---|
963 | exp.initialize(); |
---|
964 | System.err.println("Iterating..."); |
---|
965 | exp.runExperiment(); |
---|
966 | System.err.println("Postprocessing..."); |
---|
967 | exp.postProcess(); |
---|
968 | } |
---|
969 | } catch (Exception ex) { |
---|
970 | ex.printStackTrace(); |
---|
971 | System.err.println(ex.getMessage()); |
---|
972 | } |
---|
973 | } |
---|
974 | } |
---|