[4] | 1 | /* |
---|
| 2 | * This program is free software; you can redistribute it and/or modify |
---|
| 3 | * it under the terms of the GNU General Public License as published by |
---|
| 4 | * the Free Software Foundation; either version 2 of the License, or |
---|
| 5 | * (at your option) any later version. |
---|
| 6 | * |
---|
| 7 | * This program is distributed in the hope that it will be useful, |
---|
| 8 | * but WITHOUT ANY WARRANTY; without even the implied warranty of |
---|
| 9 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
---|
| 10 | * GNU General Public License for more details. |
---|
| 11 | * |
---|
| 12 | * You should have received a copy of the GNU General Public License |
---|
| 13 | * along with this program; if not, write to the Free Software |
---|
| 14 | * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. |
---|
| 15 | */ |
---|
| 16 | |
---|
| 17 | /* |
---|
| 18 | * RemoteExperiment.java |
---|
| 19 | * Copyright (C) 2000 University of Waikato, Hamilton, New Zealand |
---|
| 20 | * |
---|
| 21 | */ |
---|
| 22 | |
---|
| 23 | |
---|
| 24 | package weka.experiment; |
---|
| 25 | |
---|
| 26 | import weka.core.FastVector; |
---|
| 27 | import weka.core.Option; |
---|
| 28 | import weka.core.OptionHandler; |
---|
| 29 | import weka.core.Queue; |
---|
| 30 | import weka.core.RevisionUtils; |
---|
| 31 | import weka.core.SerializedObject; |
---|
| 32 | import weka.core.Utils; |
---|
| 33 | import weka.core.xml.KOML; |
---|
| 34 | import weka.core.xml.XMLOptions; |
---|
| 35 | import weka.experiment.xml.XMLExperiment; |
---|
| 36 | |
---|
| 37 | import java.io.BufferedInputStream; |
---|
| 38 | import java.io.BufferedOutputStream; |
---|
| 39 | import java.io.File; |
---|
| 40 | import java.io.FileInputStream; |
---|
| 41 | import java.io.FileOutputStream; |
---|
| 42 | import java.io.ObjectInputStream; |
---|
| 43 | import java.io.ObjectOutputStream; |
---|
| 44 | import java.rmi.Naming; |
---|
| 45 | import java.util.Enumeration; |
---|
| 46 | |
---|
| 47 | import javax.swing.DefaultListModel; |
---|
| 48 | |
---|
| 49 | /** |
---|
| 50 | * Holds all the necessary configuration information for a distributed |
---|
| 51 | * experiment. This object is able to be serialized for storage on disk.<p> |
---|
| 52 | * |
---|
| 53 | * This class is experimental at present. Has been tested using |
---|
| 54 | * CSVResultListener (sending results to standard out) and |
---|
| 55 | * DatabaseResultListener (InstantDB + RmiJdbc bridge). <p> |
---|
| 56 | * |
---|
| 57 | * Getting started:<p> |
---|
| 58 | * |
---|
| 59 | * Start InstantDB (with the RMI bridge) on some machine. If using java2 |
---|
| 60 | * then specify -Djava.security.policy=db.policy to the |
---|
| 61 | * virtual machine. Where db.policy is as follows: <br> |
---|
| 62 | * <pre> |
---|
| 63 | * grant { |
---|
| 64 | * permission java.security.AllPermission; |
---|
| 65 | * }; |
---|
| 66 | * </pre><p> |
---|
| 67 | * |
---|
| 68 | * Start RemoteEngine servers on x machines as per the instructons in the |
---|
| 69 | * README_Experiment_Gui file. There must be a |
---|
| 70 | * DatabaseUtils.props in either the HOME or current directory of each |
---|
| 71 | * machine, listing all necessary jdbc drivers.<p> |
---|
| 72 | * |
---|
| 73 | * The machine where a RemoteExperiment is started must also have a copy |
---|
| 74 | * of DatabaseUtils.props listing the URL to the machine where the |
---|
| 75 | * database server is running (RmiJdbc + InstantDB). <p> |
---|
| 76 | * |
---|
| 77 | * Here is an example of starting a RemoteExperiment: <p> |
---|
| 78 | * |
---|
| 79 | * <pre> |
---|
| 80 | * |
---|
| 81 | * java -Djava.rmi.server.codebase=file:/path to weka classes/ \ |
---|
| 82 | * weka.experiment.RemoteExperiment -L 1 -U 10 \ |
---|
| 83 | * -T /home/ml/datasets/UCI/iris.arff \ |
---|
| 84 | * -D "weka.experiment.DatabaseResultListener" \ |
---|
| 85 | * -P "weka.experiment.RandomSplitResultProducer" \ |
---|
| 86 | * -h rosebud.cs.waikato.ac.nz -h blackbird.cs.waikato.ac.nz -r -- \ |
---|
| 87 | * -W weka.experiment.ClassifierSplitEvaluator -- \ |
---|
| 88 | * -W weka.classifiers.bayes.NaiveBayes |
---|
| 89 | * |
---|
| 90 | * </pre> <p> |
---|
| 91 | * The "codebase" property tells rmi where to serve up weka classes from. |
---|
| 92 | * This can either be a file url (as long as a shared file system is being |
---|
| 93 | * used that is accessable by the remoteEngine servers), or http url (which |
---|
| 94 | * of course supposes that a web server is running and you have put your |
---|
| 95 | * weka classes somewhere that is web accessable). If using a file url the |
---|
| 96 | * trailing "/" is *most* important unless the weka classes are in a jar |
---|
| 97 | * file. <p> |
---|
| 98 | * |
---|
| 99 | <!-- options-start --> |
---|
| 100 | * Valid options are: <p/> |
---|
| 101 | * |
---|
| 102 | * <pre> -L <num> |
---|
| 103 | * The lower run number to start the experiment from. |
---|
| 104 | * (default 1)</pre> |
---|
| 105 | * |
---|
| 106 | * <pre> -U <num> |
---|
| 107 | * The upper run number to end the experiment at (inclusive). |
---|
| 108 | * (default 10)</pre> |
---|
| 109 | * |
---|
| 110 | * <pre> -T <arff file> |
---|
| 111 | * The dataset to run the experiment on. |
---|
| 112 | * (required, may be specified multiple times)</pre> |
---|
| 113 | * |
---|
| 114 | * <pre> -P <class name> |
---|
| 115 | * The full class name of a ResultProducer (required). |
---|
| 116 | * eg: weka.experiment.RandomSplitResultProducer</pre> |
---|
| 117 | * |
---|
| 118 | * <pre> -D <class name> |
---|
| 119 | * The full class name of a ResultListener (required). |
---|
| 120 | * eg: weka.experiment.CSVResultListener</pre> |
---|
| 121 | * |
---|
| 122 | * <pre> -N <string> |
---|
| 123 | * A string containing any notes about the experiment. |
---|
| 124 | * (default none)</pre> |
---|
| 125 | * |
---|
| 126 | * <pre> |
---|
| 127 | * Options specific to result producer weka.experiment.RandomSplitResultProducer: |
---|
| 128 | * </pre> |
---|
| 129 | * |
---|
| 130 | * <pre> -P <percent> |
---|
| 131 | * The percentage of instances to use for training. |
---|
| 132 | * (default 66)</pre> |
---|
| 133 | * |
---|
| 134 | * <pre> -D |
---|
| 135 | * Save raw split evaluator output.</pre> |
---|
| 136 | * |
---|
| 137 | * <pre> -O <file/directory name/path> |
---|
| 138 | * The filename where raw output will be stored. |
---|
| 139 | * If a directory name is specified then then individual |
---|
| 140 | * outputs will be gzipped, otherwise all output will be |
---|
| 141 | * zipped to the named file. Use in conjuction with -D. (default splitEvalutorOut.zip)</pre> |
---|
| 142 | * |
---|
| 143 | * <pre> -W <class name> |
---|
| 144 | * The full class name of a SplitEvaluator. |
---|
| 145 | * eg: weka.experiment.ClassifierSplitEvaluator</pre> |
---|
| 146 | * |
---|
| 147 | * <pre> -R |
---|
| 148 | * Set when data is not to be randomized and the data sets' size. |
---|
| 149 | * Is not to be determined via probabilistic rounding.</pre> |
---|
| 150 | * |
---|
| 151 | * <pre> |
---|
| 152 | * Options specific to split evaluator weka.experiment.ClassifierSplitEvaluator: |
---|
| 153 | * </pre> |
---|
| 154 | * |
---|
| 155 | * <pre> -W <class name> |
---|
| 156 | * The full class name of the classifier. |
---|
| 157 | * eg: weka.classifiers.bayes.NaiveBayes</pre> |
---|
| 158 | * |
---|
| 159 | * <pre> -C <index> |
---|
| 160 | * The index of the class for which IR statistics |
---|
| 161 | * are to be output. (default 1)</pre> |
---|
| 162 | * |
---|
| 163 | * <pre> -I <index> |
---|
| 164 | * The index of an attribute to output in the |
---|
| 165 | * results. This attribute should identify an |
---|
| 166 | * instance in order to know which instances are |
---|
| 167 | * in the test set of a cross validation. if 0 |
---|
| 168 | * no output (default 0).</pre> |
---|
| 169 | * |
---|
| 170 | * <pre> -P |
---|
| 171 | * Add target and prediction columns to the result |
---|
| 172 | * for each fold.</pre> |
---|
| 173 | * |
---|
| 174 | * <pre> |
---|
| 175 | * Options specific to classifier weka.classifiers.rules.ZeroR: |
---|
| 176 | * </pre> |
---|
| 177 | * |
---|
| 178 | * <pre> -D |
---|
| 179 | * If set, classifier is run in debug mode and |
---|
| 180 | * may output additional info to the console</pre> |
---|
| 181 | * |
---|
| 182 | <!-- options-end --> |
---|
| 183 | * |
---|
| 184 | * @author Mark Hall (mhall@cs.waikato.ac.nz) |
---|
| 185 | * @version $Revision: 1.16 $ |
---|
| 186 | */ |
---|
| 187 | public class RemoteExperiment |
---|
| 188 | extends Experiment { |
---|
| 189 | |
---|
| 190 | /** for serialization */ |
---|
| 191 | static final long serialVersionUID = -7357668825635314937L; |
---|
| 192 | |
---|
| 193 | /** The list of objects listening for remote experiment events */ |
---|
| 194 | private FastVector m_listeners = new FastVector(); |
---|
| 195 | |
---|
| 196 | /** Holds the names of machines with remoteEngine servers running */ |
---|
| 197 | protected DefaultListModel m_remoteHosts = new DefaultListModel(); |
---|
| 198 | |
---|
| 199 | /** The queue of available hosts */ |
---|
| 200 | private Queue m_remoteHostsQueue = new Queue(); |
---|
| 201 | |
---|
| 202 | /** The status of each of the remote hosts */ |
---|
| 203 | private int [] m_remoteHostsStatus; |
---|
| 204 | |
---|
| 205 | /** The number of times tasks have failed on each remote host */ |
---|
| 206 | private int [] m_remoteHostFailureCounts; |
---|
| 207 | |
---|
| 208 | /** status of the remote host: available */ |
---|
| 209 | protected static final int AVAILABLE=0; |
---|
| 210 | /** status of the remote host: in use */ |
---|
| 211 | protected static final int IN_USE=1; |
---|
| 212 | /** status of the remote host: connection failed */ |
---|
| 213 | protected static final int CONNECTION_FAILED=2; |
---|
| 214 | /** status of the remote host: some other failure */ |
---|
| 215 | protected static final int SOME_OTHER_FAILURE=3; |
---|
| 216 | |
---|
| 217 | // protected static final int TO_BE_RUN=0; |
---|
| 218 | // protected static final int PROCESSING=1; |
---|
| 219 | // protected static final int FAILED=2; |
---|
| 220 | // protected static final int FINISHED=3; |
---|
| 221 | |
---|
| 222 | /** allow at most 3 failures on a host before it is removed from the list |
---|
| 223 | of usable hosts */ |
---|
| 224 | protected static final int MAX_FAILURES=3; |
---|
| 225 | |
---|
| 226 | /** Set to true if MAX_FAILURES exceeded on all hosts or connections fail |
---|
| 227 | on all hosts or user aborts experiment (via gui) */ |
---|
| 228 | private boolean m_experimentAborted = false; |
---|
| 229 | |
---|
| 230 | /** The number of hosts removed due to exceeding max failures */ |
---|
| 231 | private int m_removedHosts; |
---|
| 232 | |
---|
| 233 | /** The count of failed sub-experiments */ |
---|
| 234 | private int m_failedCount; |
---|
| 235 | |
---|
| 236 | /** The count of successfully completed sub-experiments */ |
---|
| 237 | private int m_finishedCount; |
---|
| 238 | |
---|
| 239 | /** The base experiment to split up into sub experiments for remote |
---|
| 240 | execution */ |
---|
| 241 | private Experiment m_baseExperiment = null; |
---|
| 242 | |
---|
| 243 | /** The sub experiments */ |
---|
| 244 | protected Experiment [] m_subExperiments; |
---|
| 245 | |
---|
| 246 | /** The queue of sub experiments waiting to be processed */ |
---|
| 247 | private Queue m_subExpQueue = new Queue(); |
---|
| 248 | |
---|
| 249 | /** The status of each of the sub-experiments */ |
---|
| 250 | protected int [] m_subExpComplete; |
---|
| 251 | |
---|
| 252 | /** |
---|
| 253 | * If true, then sub experiments are created on the basis of data sets |
---|
| 254 | * rather than run number. |
---|
| 255 | */ |
---|
| 256 | protected boolean m_splitByDataSet = true; |
---|
| 257 | |
---|
| 258 | |
---|
| 259 | /** |
---|
| 260 | * Returns true if sub experiments are to be created on the basis of |
---|
| 261 | * data set.. |
---|
| 262 | * |
---|
| 263 | * @return a <code>boolean</code> value indicating whether sub |
---|
| 264 | * experiments are to be created on the basis of data set (true) or |
---|
| 265 | * run number (false). |
---|
| 266 | */ |
---|
| 267 | public boolean getSplitByDataSet() { |
---|
| 268 | return m_splitByDataSet; |
---|
| 269 | } |
---|
| 270 | |
---|
| 271 | /** |
---|
| 272 | * Set whether sub experiments are to be created on the basis of |
---|
| 273 | * data set. |
---|
| 274 | * |
---|
| 275 | * @param sd true if sub experiments are to be created on the basis |
---|
| 276 | * of data set. Otherwise sub experiments are created on the basis of |
---|
| 277 | * run number. |
---|
| 278 | */ |
---|
| 279 | public void setSplitByDataSet(boolean sd) { |
---|
| 280 | m_splitByDataSet = sd; |
---|
| 281 | } |
---|
| 282 | |
---|
| 283 | /** |
---|
| 284 | * Construct a new RemoteExperiment using an empty Experiment as base |
---|
| 285 | * Experiment |
---|
| 286 | * @throws Exception if the base experiment is null |
---|
| 287 | */ |
---|
| 288 | public RemoteExperiment() throws Exception { |
---|
| 289 | this(new Experiment()); |
---|
| 290 | } |
---|
| 291 | |
---|
| 292 | /** |
---|
| 293 | * Construct a new RemoteExperiment using a base Experiment |
---|
| 294 | * @param base the base experiment to use |
---|
| 295 | * @throws Exception if the base experiment is null |
---|
| 296 | */ |
---|
| 297 | public RemoteExperiment(Experiment base) throws Exception { |
---|
| 298 | setBaseExperiment(base); |
---|
| 299 | } |
---|
| 300 | |
---|
| 301 | /** |
---|
| 302 | * Add an object to the list of those interested in recieving update |
---|
| 303 | * information from the RemoteExperiment |
---|
| 304 | * @param r a listener |
---|
| 305 | */ |
---|
| 306 | public void addRemoteExperimentListener(RemoteExperimentListener r) { |
---|
| 307 | m_listeners.addElement(r); |
---|
| 308 | } |
---|
| 309 | |
---|
| 310 | /** |
---|
| 311 | * Get the base experiment used by this remote experiment |
---|
| 312 | * @return the base experiment |
---|
| 313 | */ |
---|
| 314 | public Experiment getBaseExperiment() { |
---|
| 315 | return m_baseExperiment; |
---|
| 316 | } |
---|
| 317 | |
---|
| 318 | /** |
---|
| 319 | * Set the base experiment. A sub experiment will be created for each |
---|
| 320 | * run in the base experiment. |
---|
| 321 | * @param base the base experiment to use. |
---|
| 322 | * @throws Exception if supplied base experiment is null |
---|
| 323 | */ |
---|
| 324 | public void setBaseExperiment(Experiment base) throws Exception { |
---|
| 325 | if (base == null) { |
---|
| 326 | throw new Exception("Base experiment is null!"); |
---|
| 327 | } |
---|
| 328 | m_baseExperiment = base; |
---|
| 329 | setRunLower(m_baseExperiment.getRunLower()); |
---|
| 330 | setRunUpper(m_baseExperiment.getRunUpper()); |
---|
| 331 | setResultListener(m_baseExperiment.getResultListener()); |
---|
| 332 | setResultProducer(m_baseExperiment.getResultProducer()); |
---|
| 333 | setDatasets(m_baseExperiment.getDatasets()); |
---|
| 334 | setUsePropertyIterator(m_baseExperiment.getUsePropertyIterator()); |
---|
| 335 | setPropertyPath(m_baseExperiment.getPropertyPath()); |
---|
| 336 | setPropertyArray(m_baseExperiment.getPropertyArray()); |
---|
| 337 | setNotes(m_baseExperiment.getNotes()); |
---|
| 338 | m_ClassFirst = m_baseExperiment.m_ClassFirst; |
---|
| 339 | m_AdvanceDataSetFirst = m_baseExperiment.m_AdvanceDataSetFirst; |
---|
| 340 | } |
---|
| 341 | |
---|
| 342 | /** |
---|
| 343 | * Set the user notes. |
---|
| 344 | * |
---|
| 345 | * @param newNotes New user notes. |
---|
| 346 | */ |
---|
| 347 | public void setNotes(String newNotes) { |
---|
| 348 | |
---|
| 349 | super.setNotes(newNotes); |
---|
| 350 | m_baseExperiment.setNotes(newNotes); |
---|
| 351 | } |
---|
| 352 | |
---|
| 353 | /** |
---|
| 354 | * Set the lower run number for the experiment. |
---|
| 355 | * |
---|
| 356 | * @param newRunLower the lower run number for the experiment. |
---|
| 357 | */ |
---|
| 358 | public void setRunLower(int newRunLower) { |
---|
| 359 | |
---|
| 360 | super.setRunLower(newRunLower); |
---|
| 361 | m_baseExperiment.setRunLower(newRunLower); |
---|
| 362 | } |
---|
| 363 | |
---|
| 364 | /** |
---|
| 365 | * Set the upper run number for the experiment. |
---|
| 366 | * |
---|
| 367 | * @param newRunUpper the upper run number for the experiment. |
---|
| 368 | */ |
---|
| 369 | public void setRunUpper(int newRunUpper) { |
---|
| 370 | |
---|
| 371 | super.setRunUpper(newRunUpper); |
---|
| 372 | m_baseExperiment.setRunUpper(newRunUpper); |
---|
| 373 | } |
---|
| 374 | |
---|
| 375 | /** |
---|
| 376 | * Sets the result listener where results will be sent. |
---|
| 377 | * |
---|
| 378 | * @param newResultListener the result listener where results will be sent. |
---|
| 379 | */ |
---|
| 380 | public void setResultListener(ResultListener newResultListener) { |
---|
| 381 | |
---|
| 382 | super.setResultListener(newResultListener); |
---|
| 383 | m_baseExperiment.setResultListener(newResultListener); |
---|
| 384 | } |
---|
| 385 | |
---|
| 386 | /** |
---|
| 387 | * Set the result producer used for the current experiment. |
---|
| 388 | * |
---|
| 389 | * @param newResultProducer result producer to use for the current |
---|
| 390 | * experiment. |
---|
| 391 | */ |
---|
| 392 | public void setResultProducer(ResultProducer newResultProducer) { |
---|
| 393 | |
---|
| 394 | super.setResultProducer(newResultProducer); |
---|
| 395 | m_baseExperiment.setResultProducer(newResultProducer); |
---|
| 396 | } |
---|
| 397 | |
---|
| 398 | /** |
---|
| 399 | * Set the datasets to use in the experiment |
---|
| 400 | * @param ds the list of datasets to use |
---|
| 401 | */ |
---|
| 402 | public void setDatasets(DefaultListModel ds) { |
---|
| 403 | super.setDatasets(ds); |
---|
| 404 | m_baseExperiment.setDatasets(ds); |
---|
| 405 | } |
---|
| 406 | |
---|
| 407 | /** |
---|
| 408 | * Sets whether the custom property iterator should be used. |
---|
| 409 | * |
---|
| 410 | * @param newUsePropertyIterator true if so |
---|
| 411 | */ |
---|
| 412 | public void setUsePropertyIterator(boolean newUsePropertyIterator) { |
---|
| 413 | |
---|
| 414 | super.setUsePropertyIterator(newUsePropertyIterator); |
---|
| 415 | m_baseExperiment.setUsePropertyIterator(newUsePropertyIterator); |
---|
| 416 | } |
---|
| 417 | |
---|
| 418 | /** |
---|
| 419 | * Sets the path of properties taken to get to the custom property |
---|
| 420 | * to iterate over. |
---|
| 421 | * |
---|
| 422 | * @param newPropertyPath an array of PropertyNodes |
---|
| 423 | */ |
---|
| 424 | public void setPropertyPath(PropertyNode [] newPropertyPath) { |
---|
| 425 | |
---|
| 426 | super.setPropertyPath(newPropertyPath); |
---|
| 427 | m_baseExperiment.setPropertyPath(newPropertyPath); |
---|
| 428 | } |
---|
| 429 | |
---|
| 430 | /** |
---|
| 431 | * Sets the array of values to set the custom property to. |
---|
| 432 | * |
---|
| 433 | * @param newPropArray a value of type Object which should be an |
---|
| 434 | * array of the appropriate values. |
---|
| 435 | */ |
---|
| 436 | public void setPropertyArray(Object newPropArray) { |
---|
| 437 | super.setPropertyArray(newPropArray); |
---|
| 438 | m_baseExperiment.setPropertyArray(newPropArray); |
---|
| 439 | } |
---|
| 440 | |
---|
| 441 | |
---|
| 442 | /** |
---|
| 443 | * Prepares a remote experiment for running, creates sub experiments |
---|
| 444 | * |
---|
| 445 | * @throws Exception if an error occurs |
---|
| 446 | */ |
---|
| 447 | public void initialize() throws Exception { |
---|
| 448 | if (m_baseExperiment == null) { |
---|
| 449 | throw new Exception("No base experiment specified!"); |
---|
| 450 | } |
---|
| 451 | |
---|
| 452 | m_experimentAborted = false; |
---|
| 453 | m_finishedCount = 0; |
---|
| 454 | m_failedCount = 0; |
---|
| 455 | m_RunNumber = getRunLower(); |
---|
| 456 | m_DatasetNumber = 0; |
---|
| 457 | m_PropertyNumber = 0; |
---|
| 458 | m_CurrentProperty = -1; |
---|
| 459 | m_CurrentInstances = null; |
---|
| 460 | m_Finished = false; |
---|
| 461 | |
---|
| 462 | if (m_remoteHosts.size() == 0) { |
---|
| 463 | throw new Exception("No hosts specified!"); |
---|
| 464 | } |
---|
| 465 | // initialize all remote hosts to available |
---|
| 466 | m_remoteHostsStatus = new int [m_remoteHosts.size()]; |
---|
| 467 | m_remoteHostFailureCounts = new int [m_remoteHosts.size()]; |
---|
| 468 | |
---|
| 469 | m_remoteHostsQueue = new Queue(); |
---|
| 470 | // prime the hosts queue |
---|
| 471 | for (int i=0;i<m_remoteHosts.size();i++) { |
---|
| 472 | m_remoteHostsQueue.push(new Integer(i)); |
---|
| 473 | } |
---|
| 474 | |
---|
| 475 | // set up sub experiments |
---|
| 476 | m_subExpQueue = new Queue(); |
---|
| 477 | int numExps; |
---|
| 478 | if (getSplitByDataSet()) { |
---|
| 479 | numExps = m_baseExperiment.getDatasets().size(); |
---|
| 480 | } else { |
---|
| 481 | numExps = getRunUpper() - getRunLower() + 1; |
---|
| 482 | } |
---|
| 483 | m_subExperiments = new Experiment[numExps]; |
---|
| 484 | m_subExpComplete = new int[numExps]; |
---|
| 485 | // create copy of base experiment |
---|
| 486 | SerializedObject so = new SerializedObject(m_baseExperiment); |
---|
| 487 | |
---|
| 488 | if (getSplitByDataSet()) { |
---|
| 489 | for (int i = 0; i < m_baseExperiment.getDatasets().size(); i++) { |
---|
| 490 | m_subExperiments[i] = (Experiment)so.getObject(); |
---|
| 491 | // one for each data set |
---|
| 492 | DefaultListModel temp = new DefaultListModel(); |
---|
| 493 | temp.addElement(m_baseExperiment.getDatasets().elementAt(i)); |
---|
| 494 | m_subExperiments[i].setDatasets(temp); |
---|
| 495 | m_subExpQueue.push(new Integer(i)); |
---|
| 496 | } |
---|
| 497 | } else { |
---|
| 498 | for (int i = getRunLower(); i <= getRunUpper(); i++) { |
---|
| 499 | m_subExperiments[i-getRunLower()] = (Experiment)so.getObject(); |
---|
| 500 | // one run for each sub experiment |
---|
| 501 | m_subExperiments[i-getRunLower()].setRunLower(i); |
---|
| 502 | m_subExperiments[i-getRunLower()].setRunUpper(i); |
---|
| 503 | |
---|
| 504 | m_subExpQueue.push(new Integer(i-getRunLower())); |
---|
| 505 | } |
---|
| 506 | } |
---|
| 507 | } |
---|
| 508 | |
---|
| 509 | /** |
---|
| 510 | * Inform all listeners of progress |
---|
| 511 | * @param status true if this is a status type of message |
---|
| 512 | * @param log true if this is a log type of message |
---|
| 513 | * @param finished true if the remote experiment has finished |
---|
| 514 | * @param message the message. |
---|
| 515 | */ |
---|
| 516 | private synchronized void notifyListeners(boolean status, |
---|
| 517 | boolean log, |
---|
| 518 | boolean finished, |
---|
| 519 | String message) { |
---|
| 520 | if (m_listeners.size() > 0) { |
---|
| 521 | for (int i=0;i<m_listeners.size();i++) { |
---|
| 522 | RemoteExperimentListener r = |
---|
| 523 | (RemoteExperimentListener)(m_listeners.elementAt(i)); |
---|
| 524 | r.remoteExperimentStatus(new RemoteExperimentEvent(status, |
---|
| 525 | log, |
---|
| 526 | finished, |
---|
| 527 | message)); |
---|
| 528 | } |
---|
| 529 | } else { |
---|
| 530 | System.err.println(message); |
---|
| 531 | } |
---|
| 532 | } |
---|
| 533 | |
---|
| 534 | /** |
---|
| 535 | * Set the abort flag |
---|
| 536 | */ |
---|
| 537 | public void abortExperiment() { |
---|
| 538 | m_experimentAborted = true; |
---|
| 539 | } |
---|
| 540 | |
---|
| 541 | /** |
---|
| 542 | * Increment the number of successfully completed sub experiments |
---|
| 543 | */ |
---|
| 544 | protected synchronized void incrementFinished() { |
---|
| 545 | m_finishedCount++; |
---|
| 546 | } |
---|
| 547 | |
---|
| 548 | /** |
---|
| 549 | * Increment the overall number of failures and the number of failures for |
---|
| 550 | * a particular host |
---|
| 551 | * @param hostNum the index of the host to increment failure count |
---|
| 552 | */ |
---|
| 553 | protected synchronized void incrementFailed(int hostNum) { |
---|
| 554 | m_failedCount++; |
---|
| 555 | m_remoteHostFailureCounts[hostNum]++; |
---|
| 556 | } |
---|
| 557 | |
---|
| 558 | /** |
---|
| 559 | * Push an experiment back on the queue of waiting experiments |
---|
| 560 | * @param expNum the index of the experiment to push onto the queue |
---|
| 561 | */ |
---|
| 562 | protected synchronized void waitingExperiment(int expNum) { |
---|
| 563 | m_subExpQueue.push(new Integer(expNum)); |
---|
| 564 | } |
---|
| 565 | |
---|
| 566 | /** |
---|
| 567 | * Check to see if we have failed to connect to all hosts |
---|
| 568 | * |
---|
| 569 | * @return true if failed to connect to all hosts |
---|
| 570 | */ |
---|
| 571 | private boolean checkForAllFailedHosts() { |
---|
| 572 | boolean allbad = true; |
---|
| 573 | for (int i = 0; i < m_remoteHostsStatus.length; i++) { |
---|
| 574 | if (m_remoteHostsStatus[i] != CONNECTION_FAILED) { |
---|
| 575 | allbad = false; |
---|
| 576 | break; |
---|
| 577 | } |
---|
| 578 | } |
---|
| 579 | if (allbad) { |
---|
| 580 | abortExperiment(); |
---|
| 581 | notifyListeners(false,true,true,"Experiment aborted! All connections " |
---|
| 582 | +"to remote hosts failed."); |
---|
| 583 | } |
---|
| 584 | return allbad; |
---|
| 585 | } |
---|
| 586 | |
---|
| 587 | /** |
---|
| 588 | * Returns some post experiment information. |
---|
| 589 | * @return a String containing some post experiment info |
---|
| 590 | */ |
---|
| 591 | private String postExperimentInfo() { |
---|
| 592 | StringBuffer text = new StringBuffer(); |
---|
| 593 | text.append(m_finishedCount+(m_splitByDataSet |
---|
| 594 | ? " data sets" |
---|
| 595 | : " runs") + " completed successfully. " |
---|
| 596 | +m_failedCount+" failures during running.\n"); |
---|
| 597 | System.err.print(text.toString()); |
---|
| 598 | return text.toString(); |
---|
| 599 | } |
---|
| 600 | |
---|
| 601 | /** |
---|
| 602 | * Pushes a host back onto the queue of available hosts and attempts to |
---|
| 603 | * launch a waiting experiment (if any). |
---|
| 604 | * @param hostNum the index of the host to push back onto the queue of |
---|
| 605 | * available hosts |
---|
| 606 | */ |
---|
| 607 | protected synchronized void availableHost(int hostNum) { |
---|
| 608 | if (hostNum >= 0) { |
---|
| 609 | if (m_remoteHostFailureCounts[hostNum] < MAX_FAILURES) { |
---|
| 610 | m_remoteHostsQueue.push(new Integer(hostNum)); |
---|
| 611 | } else { |
---|
| 612 | notifyListeners(false,true,false,"Max failures exceeded for host " |
---|
| 613 | +((String)m_remoteHosts.elementAt(hostNum)) |
---|
| 614 | +". Removed from host list."); |
---|
| 615 | m_removedHosts++; |
---|
| 616 | } |
---|
| 617 | } |
---|
| 618 | |
---|
| 619 | // check for all sub exp complete or all hosts failed or failed count |
---|
| 620 | // exceeded |
---|
| 621 | if (m_failedCount == (MAX_FAILURES * m_remoteHosts.size())) { |
---|
| 622 | abortExperiment(); |
---|
| 623 | notifyListeners(false,true,true,"Experiment aborted! Max failures " |
---|
| 624 | +"exceeded on all remote hosts."); |
---|
| 625 | return; |
---|
| 626 | } |
---|
| 627 | |
---|
| 628 | if ((getSplitByDataSet() && |
---|
| 629 | (m_baseExperiment.getDatasets().size() == m_finishedCount)) || |
---|
| 630 | (!getSplitByDataSet() && |
---|
| 631 | ((getRunUpper() - getRunLower() + 1) == m_finishedCount))) { |
---|
| 632 | notifyListeners(false,true,false,"Experiment completed successfully."); |
---|
| 633 | notifyListeners(false,true,true,postExperimentInfo()); |
---|
| 634 | return; |
---|
| 635 | } |
---|
| 636 | |
---|
| 637 | if (checkForAllFailedHosts()) { |
---|
| 638 | return; |
---|
| 639 | } |
---|
| 640 | |
---|
| 641 | if (m_experimentAborted && |
---|
| 642 | (m_remoteHostsQueue.size() + m_removedHosts) == m_remoteHosts.size()) { |
---|
| 643 | notifyListeners(false,true,true,"Experiment aborted. All remote tasks " |
---|
| 644 | +"finished."); |
---|
| 645 | } |
---|
| 646 | |
---|
| 647 | if (!m_subExpQueue.empty() && !m_experimentAborted) { |
---|
| 648 | if (!m_remoteHostsQueue.empty()) { |
---|
| 649 | int availHost, waitingExp; |
---|
| 650 | try { |
---|
| 651 | availHost = ((Integer)m_remoteHostsQueue.pop()).intValue(); |
---|
| 652 | waitingExp = ((Integer)m_subExpQueue.pop()).intValue(); |
---|
| 653 | launchNext(waitingExp, availHost); |
---|
| 654 | } catch (Exception ex) { |
---|
| 655 | ex.printStackTrace(); |
---|
| 656 | } |
---|
| 657 | } |
---|
| 658 | } |
---|
| 659 | } |
---|
| 660 | |
---|
| 661 | /** |
---|
| 662 | * Launch a sub experiment on a remote host |
---|
| 663 | * @param wexp the index of the sub experiment to launch |
---|
| 664 | * @param ah the index of the available host to launch on |
---|
| 665 | */ |
---|
| 666 | public void launchNext(final int wexp, final int ah) { |
---|
| 667 | |
---|
| 668 | Thread subExpThread; |
---|
| 669 | subExpThread = new Thread() { |
---|
| 670 | public void run() { |
---|
| 671 | m_remoteHostsStatus[ah] = IN_USE; |
---|
| 672 | m_subExpComplete[wexp] = TaskStatusInfo.PROCESSING; |
---|
| 673 | RemoteExperimentSubTask expSubTsk = new RemoteExperimentSubTask(); |
---|
| 674 | expSubTsk.setExperiment(m_subExperiments[wexp]); |
---|
| 675 | String subTaskType = (getSplitByDataSet()) |
---|
| 676 | ? "dataset :" + ((File)m_subExperiments[wexp].getDatasets(). |
---|
| 677 | elementAt(0)).getName() |
---|
| 678 | : "run :" + m_subExperiments[wexp].getRunLower(); |
---|
| 679 | try { |
---|
| 680 | String name = "//" |
---|
| 681 | +((String)m_remoteHosts.elementAt(ah)) |
---|
| 682 | +"/RemoteEngine"; |
---|
| 683 | Compute comp = (Compute) Naming.lookup(name); |
---|
| 684 | // assess the status of the sub-exp |
---|
| 685 | notifyListeners(false,true,false,"Starting " |
---|
| 686 | +subTaskType |
---|
| 687 | +" on host " |
---|
| 688 | +((String)m_remoteHosts.elementAt(ah))); |
---|
| 689 | Object subTaskId = comp.executeTask(expSubTsk); |
---|
| 690 | boolean finished = false; |
---|
| 691 | TaskStatusInfo is = null; |
---|
| 692 | while (!finished) { |
---|
| 693 | try { |
---|
| 694 | Thread.sleep(2000); |
---|
| 695 | |
---|
| 696 | TaskStatusInfo cs = (TaskStatusInfo)comp. |
---|
| 697 | checkStatus(subTaskId); |
---|
| 698 | if (cs.getExecutionStatus() == TaskStatusInfo.FINISHED) { |
---|
| 699 | // push host back onto queue and try launching any waiting |
---|
| 700 | // sub-experiments |
---|
| 701 | notifyListeners(false, true, false, cs.getStatusMessage()); |
---|
| 702 | m_remoteHostsStatus[ah] = AVAILABLE; |
---|
| 703 | incrementFinished(); |
---|
| 704 | availableHost(ah); |
---|
| 705 | finished = true; |
---|
| 706 | } else if (cs.getExecutionStatus() == TaskStatusInfo.FAILED) { |
---|
| 707 | // a non connection related error---possibly host doesn't have |
---|
| 708 | // access to data sets or security policy is not set up |
---|
| 709 | // correctly or classifier(s) failed for some reason |
---|
| 710 | notifyListeners(false, true, false, cs.getStatusMessage()); |
---|
| 711 | m_remoteHostsStatus[ah] = SOME_OTHER_FAILURE; |
---|
| 712 | m_subExpComplete[wexp] = TaskStatusInfo.FAILED; |
---|
| 713 | notifyListeners(false,true,false,subTaskType |
---|
| 714 | +" "+cs.getStatusMessage() |
---|
| 715 | +". Scheduling for execution on another host."); |
---|
| 716 | incrementFailed(ah); |
---|
| 717 | // push experiment back onto queue |
---|
| 718 | waitingExperiment(wexp); |
---|
| 719 | // push host back onto queue and try launching any waiting |
---|
| 720 | // sub-experiments. Host is pushed back on the queue as the |
---|
| 721 | // failure may be temporary---eg. with InstantDB using the |
---|
| 722 | // RMI bridge, two or more threads may try to create the |
---|
| 723 | // experiment index or results table simultaneously; all but |
---|
| 724 | // one will throw an exception. These hosts are still usable |
---|
| 725 | // however. |
---|
| 726 | availableHost(ah); |
---|
| 727 | finished = true; |
---|
| 728 | } else { |
---|
| 729 | if (is == null) { |
---|
| 730 | is = cs; |
---|
| 731 | notifyListeners(false, true, false, cs.getStatusMessage()); |
---|
| 732 | } else { |
---|
| 733 | if (cs.getStatusMessage(). |
---|
| 734 | compareTo(is.getStatusMessage()) != 0) { |
---|
| 735 | |
---|
| 736 | notifyListeners(false, true, false, |
---|
| 737 | cs.getStatusMessage()); |
---|
| 738 | } |
---|
| 739 | is = cs; |
---|
| 740 | } |
---|
| 741 | } |
---|
| 742 | } catch (InterruptedException ie) { |
---|
| 743 | } |
---|
| 744 | } |
---|
| 745 | |
---|
| 746 | } catch (Exception ce) { |
---|
| 747 | m_remoteHostsStatus[ah] = CONNECTION_FAILED; |
---|
| 748 | m_subExpComplete[wexp] = TaskStatusInfo.TO_BE_RUN; |
---|
| 749 | System.err.println(ce); |
---|
| 750 | ce.printStackTrace(); |
---|
| 751 | notifyListeners(false,true,false,"Connection to " |
---|
| 752 | +((String)m_remoteHosts.elementAt(ah)) |
---|
| 753 | +" failed. Scheduling " |
---|
| 754 | +subTaskType |
---|
| 755 | +" for execution on another host."); |
---|
| 756 | checkForAllFailedHosts(); |
---|
| 757 | waitingExperiment(wexp); |
---|
| 758 | } finally { |
---|
| 759 | if (isInterrupted()) { |
---|
| 760 | System.err.println("Sub exp Interupted!"); |
---|
| 761 | } |
---|
| 762 | } |
---|
| 763 | } |
---|
| 764 | }; |
---|
| 765 | subExpThread.setPriority(Thread.MIN_PRIORITY); |
---|
| 766 | subExpThread.start(); |
---|
| 767 | } |
---|
| 768 | |
---|
| 769 | /** |
---|
| 770 | * Overides the one in Experiment |
---|
| 771 | * @throws Exception never throws an exception |
---|
| 772 | */ |
---|
| 773 | public void nextIteration() throws Exception { |
---|
| 774 | |
---|
| 775 | } |
---|
| 776 | |
---|
| 777 | /** |
---|
| 778 | * overides the one in Experiment |
---|
| 779 | */ |
---|
| 780 | public void advanceCounters() { |
---|
| 781 | |
---|
| 782 | } |
---|
| 783 | |
---|
| 784 | /** |
---|
| 785 | * overides the one in Experiment |
---|
| 786 | */ |
---|
| 787 | public void postProcess() { |
---|
| 788 | |
---|
| 789 | } |
---|
| 790 | |
---|
| 791 | /** |
---|
| 792 | * Add a host name to the list of remote hosts |
---|
| 793 | * @param hostname the host name to add to the list |
---|
| 794 | */ |
---|
| 795 | public void addRemoteHost(String hostname) { |
---|
| 796 | m_remoteHosts.addElement(hostname); |
---|
| 797 | } |
---|
| 798 | |
---|
| 799 | /** |
---|
| 800 | * Get the list of remote host names |
---|
| 801 | * @return the list of remote host names |
---|
| 802 | */ |
---|
| 803 | public DefaultListModel getRemoteHosts() { |
---|
| 804 | return m_remoteHosts; |
---|
| 805 | } |
---|
| 806 | |
---|
| 807 | /** |
---|
| 808 | * Set the list of remote host names |
---|
| 809 | * @param list the list of remote host names |
---|
| 810 | */ |
---|
| 811 | public void setRemoteHosts(DefaultListModel list) { |
---|
| 812 | m_remoteHosts = list; |
---|
| 813 | } |
---|
| 814 | |
---|
| 815 | /** |
---|
| 816 | * Overides toString in Experiment |
---|
| 817 | * @return a description of this remote experiment |
---|
| 818 | */ |
---|
| 819 | public String toString() { |
---|
| 820 | String result = m_baseExperiment.toString(); |
---|
| 821 | |
---|
| 822 | result += "\nRemote Hosts:\n"; |
---|
| 823 | for (int i=0;i<m_remoteHosts.size();i++) { |
---|
| 824 | result += ((String)m_remoteHosts.elementAt(i)) +'\n'; |
---|
| 825 | } |
---|
| 826 | return result; |
---|
| 827 | } |
---|
| 828 | |
---|
| 829 | /** |
---|
| 830 | * Overides runExperiment in Experiment |
---|
| 831 | */ |
---|
| 832 | public void runExperiment() { |
---|
| 833 | int totalHosts = m_remoteHostsQueue.size(); |
---|
| 834 | // Try to launch sub experiments on all available hosts |
---|
| 835 | for (int i = 0; i < totalHosts; i++) { |
---|
| 836 | availableHost(-1); |
---|
| 837 | } |
---|
| 838 | } |
---|
| 839 | |
---|
| 840 | /** |
---|
| 841 | * Returns the revision string. |
---|
| 842 | * |
---|
| 843 | * @return the revision |
---|
| 844 | */ |
---|
| 845 | public String getRevision() { |
---|
| 846 | return RevisionUtils.extract("$Revision: 1.16 $"); |
---|
| 847 | } |
---|
| 848 | |
---|
| 849 | /** |
---|
| 850 | * Configures/Runs the Experiment from the command line. |
---|
| 851 | * |
---|
| 852 | * @param args command line arguments to the Experiment. |
---|
| 853 | */ |
---|
| 854 | public static void main(String[] args) { |
---|
| 855 | |
---|
| 856 | try { |
---|
| 857 | RemoteExperiment exp = null; |
---|
| 858 | |
---|
| 859 | // get options from XML? |
---|
| 860 | String xmlOption = Utils.getOption("xml", args); |
---|
| 861 | if (!xmlOption.equals("")) |
---|
| 862 | args = new XMLOptions(xmlOption).toArray(); |
---|
| 863 | |
---|
| 864 | Experiment base = null; |
---|
| 865 | String expFile = Utils.getOption('l', args); |
---|
| 866 | String saveFile = Utils.getOption('s', args); |
---|
| 867 | boolean runExp = Utils.getFlag('r', args); |
---|
| 868 | FastVector remoteHosts = new FastVector(); |
---|
| 869 | String runHost = " "; |
---|
| 870 | while (runHost.length() != 0) { |
---|
| 871 | runHost = Utils.getOption('h', args); |
---|
| 872 | if (runHost.length() != 0) { |
---|
| 873 | remoteHosts.addElement(runHost); |
---|
| 874 | } |
---|
| 875 | } |
---|
| 876 | if (expFile.length() == 0) { |
---|
| 877 | base = new Experiment(); |
---|
| 878 | try { |
---|
| 879 | base.setOptions(args); |
---|
| 880 | Utils.checkForRemainingOptions(args); |
---|
| 881 | } catch (Exception ex) { |
---|
| 882 | ex.printStackTrace(); |
---|
| 883 | String result = "Usage:\n\n" |
---|
| 884 | + "-l <exp file>\n" |
---|
| 885 | + "\tLoad experiment from file (default use cli options)\n" |
---|
| 886 | + "-s <exp file>\n" |
---|
| 887 | + "\tSave experiment to file after setting other options\n" |
---|
| 888 | + "\t(default don't save)\n" |
---|
| 889 | + "-h <remote host name>\n" |
---|
| 890 | + "\tHost to run experiment on (may be specified more than once\n" |
---|
| 891 | + "\tfor multiple remote hosts)\n" |
---|
| 892 | + "-r \n" |
---|
| 893 | + "\tRun experiment on (default don't run)\n" |
---|
| 894 | + "-xml <filename | xml-string>\n" |
---|
| 895 | + "\tget options from XML-Data instead from parameters\n" |
---|
| 896 | + "\n"; |
---|
| 897 | Enumeration enm = ((OptionHandler)base).listOptions(); |
---|
| 898 | while (enm.hasMoreElements()) { |
---|
| 899 | Option option = (Option) enm.nextElement(); |
---|
| 900 | result += option.synopsis() + "\n"; |
---|
| 901 | result += option.description() + "\n"; |
---|
| 902 | } |
---|
| 903 | throw new Exception(result + "\n" + ex.getMessage()); |
---|
| 904 | } |
---|
| 905 | } else { |
---|
| 906 | Object tmp; |
---|
| 907 | |
---|
| 908 | // KOML? |
---|
| 909 | if ( (KOML.isPresent()) && (expFile.toLowerCase().endsWith(KOML.FILE_EXTENSION)) ) { |
---|
| 910 | tmp = KOML.read(expFile); |
---|
| 911 | } |
---|
| 912 | else |
---|
| 913 | // XML? |
---|
| 914 | if (expFile.toLowerCase().endsWith(".xml")) { |
---|
| 915 | XMLExperiment xml = new XMLExperiment(); |
---|
| 916 | tmp = xml.read(expFile); |
---|
| 917 | } |
---|
| 918 | // binary |
---|
| 919 | else { |
---|
| 920 | FileInputStream fi = new FileInputStream(expFile); |
---|
| 921 | ObjectInputStream oi = new ObjectInputStream( |
---|
| 922 | new BufferedInputStream(fi)); |
---|
| 923 | tmp = oi.readObject(); |
---|
| 924 | oi.close(); |
---|
| 925 | } |
---|
| 926 | if (tmp instanceof RemoteExperiment) { |
---|
| 927 | exp = (RemoteExperiment)tmp; |
---|
| 928 | } else { |
---|
| 929 | base = (Experiment)tmp; |
---|
| 930 | } |
---|
| 931 | } |
---|
| 932 | if (base != null) { |
---|
| 933 | exp = new RemoteExperiment(base); |
---|
| 934 | } |
---|
| 935 | for (int i=0;i<remoteHosts.size();i++) { |
---|
| 936 | exp.addRemoteHost((String)remoteHosts.elementAt(i)); |
---|
| 937 | } |
---|
| 938 | System.err.println("Experiment:\n" + exp.toString()); |
---|
| 939 | |
---|
| 940 | if (saveFile.length() != 0) { |
---|
| 941 | // KOML? |
---|
| 942 | if ( (KOML.isPresent()) && (saveFile.toLowerCase().endsWith(KOML.FILE_EXTENSION)) ) { |
---|
| 943 | KOML.write(saveFile, exp); |
---|
| 944 | } |
---|
| 945 | else |
---|
| 946 | // XML? |
---|
| 947 | if (saveFile.toLowerCase().endsWith(".xml")) { |
---|
| 948 | XMLExperiment xml = new XMLExperiment(); |
---|
| 949 | xml.write(saveFile, exp); |
---|
| 950 | } |
---|
| 951 | // binary |
---|
| 952 | else { |
---|
| 953 | FileOutputStream fo = new FileOutputStream(saveFile); |
---|
| 954 | ObjectOutputStream oo = new ObjectOutputStream( |
---|
| 955 | new BufferedOutputStream(fo)); |
---|
| 956 | oo.writeObject(exp); |
---|
| 957 | oo.close(); |
---|
| 958 | } |
---|
| 959 | } |
---|
| 960 | |
---|
| 961 | if (runExp) { |
---|
| 962 | System.err.println("Initializing..."); |
---|
| 963 | exp.initialize(); |
---|
| 964 | System.err.println("Iterating..."); |
---|
| 965 | exp.runExperiment(); |
---|
| 966 | System.err.println("Postprocessing..."); |
---|
| 967 | exp.postProcess(); |
---|
| 968 | } |
---|
| 969 | } catch (Exception ex) { |
---|
| 970 | ex.printStackTrace(); |
---|
| 971 | System.err.println(ex.getMessage()); |
---|
| 972 | } |
---|
| 973 | } |
---|
| 974 | } |
---|