/* * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. */ /* * DatabaseResultProducer.java * Copyright (C) 1999 University of Waikato, Hamilton, New Zealand * */ package weka.experiment; import weka.core.AdditionalMeasureProducer; import weka.core.Instances; import weka.core.Option; import weka.core.OptionHandler; import weka.core.RevisionUtils; import weka.core.Utils; import java.util.Enumeration; import java.util.Vector; /** * Examines a database and extracts out the results produced by the specified ResultProducer and submits them to the specified ResultListener. If a result needs to be generated, the ResultProducer is used to obtain the result. *

* * Valid options are:

* *

 -F <field name>
 *  The name of the database field to cache over.
 *  eg: "Fold" (default none)
* *
 -W <class name>
 *  The full class name of a ResultProducer.
 *  eg: weka.experiment.CrossValidationResultProducer
* *
 
 * Options specific to result producer weka.experiment.CrossValidationResultProducer:
 * 
* *
 -X <number of folds>
 *  The number of folds to use for the cross-validation.
 *  (default 10)
* *
 -D
 * Save raw split evaluator output.
* *
 -O <file/directory name/path>
 *  The filename where raw output will be stored.
 *  If a directory name is specified then then individual
 *  outputs will be gzipped, otherwise all output will be
 *  zipped to the named file. Use in conjuction with -D. (default splitEvalutorOut.zip)
* *
 -W <class name>
 *  The full class name of a SplitEvaluator.
 *  eg: weka.experiment.ClassifierSplitEvaluator
* *
 
 * Options specific to split evaluator weka.experiment.ClassifierSplitEvaluator:
 * 
* *
 -W <class name>
 *  The full class name of the classifier.
 *  eg: weka.classifiers.bayes.NaiveBayes
* *
 -C <index>
 *  The index of the class for which IR statistics
 *  are to be output. (default 1)
* *
 -I <index>
 *  The index of an attribute to output in the
 *  results. This attribute should identify an
 *  instance in order to know which instances are
 *  in the test set of a cross validation. if 0
 *  no output (default 0).
* *
 -P
 *  Add target and prediction columns to the result
 *  for each fold.
* *
 
 * Options specific to classifier weka.classifiers.rules.ZeroR:
 * 
* *
 -D
 *  If set, classifier is run in debug mode and
 *  may output additional info to the console
* * * @author Len Trigg (trigg@cs.waikato.ac.nz) * @version $Revision: 1.18 $ */ public class DatabaseResultProducer extends DatabaseResultListener implements ResultProducer, OptionHandler, AdditionalMeasureProducer { /** for serialization */ static final long serialVersionUID = -5620660780203158666L; /** The dataset of interest */ protected Instances m_Instances; /** The ResultListener to send results to */ protected ResultListener m_ResultListener = new CSVResultListener(); /** The ResultProducer used to generate results */ protected ResultProducer m_ResultProducer = new CrossValidationResultProducer(); /** The names of any additional measures to look for in SplitEvaluators */ protected String [] m_AdditionalMeasures = null; /** * Returns a string describing this result producer * @return a description of the result producer suitable for * displaying in the explorer/experimenter gui */ public String globalInfo() { return "Examines a database and extracts out " +"the results produced by the specified ResultProducer " +"and submits them to the specified ResultListener. If a result needs " +"to be generated, the ResultProducer is used to obtain the result."; } /** * Creates the DatabaseResultProducer, letting the parent constructor do * it's thing. * * @throws Exception if an error occurs */ public DatabaseResultProducer() throws Exception { super(); } /** * Gets the keys for a specified run number. Different run * numbers correspond to different randomizations of the data. Keys * produced should be sent to the current ResultListener * * @param run the run number to get keys for. * @throws Exception if a problem occurs while getting the keys */ public void doRunKeys(int run) throws Exception { if (m_ResultProducer == null) { throw new Exception("No ResultProducer set"); } if (m_ResultListener == null) { throw new Exception("No ResultListener set"); } if (m_Instances == null) { throw new Exception("No Instances set"); } // Tell the resultproducer to send results to us m_ResultProducer.setResultListener(this); m_ResultProducer.setInstances(m_Instances); m_ResultProducer.doRunKeys(run); } /** * Gets the results for a specified run number. Different run * numbers correspond to different randomizations of the data. Results * produced should be sent to the current ResultListener * * @param run the run number to get results for. * @throws Exception if a problem occurs while getting the results */ public void doRun(int run) throws Exception { if (m_ResultProducer == null) { throw new Exception("No ResultProducer set"); } if (m_ResultListener == null) { throw new Exception("No ResultListener set"); } if (m_Instances == null) { throw new Exception("No Instances set"); } // Tell the resultproducer to send results to us m_ResultProducer.setResultListener(this); m_ResultProducer.setInstances(m_Instances); m_ResultProducer.doRun(run); } /** * Prepare for the results to be received. * * @param rp the ResultProducer that will generate the results * @throws Exception if an error occurs during preprocessing. */ public void preProcess(ResultProducer rp) throws Exception { super.preProcess(rp); if (m_ResultListener == null) { throw new Exception("No ResultListener set"); } m_ResultListener.preProcess(this); } /** * When this method is called, it indicates that no more results * will be sent that need to be grouped together in any way. * * @param rp the ResultProducer that generated the results * @throws Exception if an error occurs */ public void postProcess(ResultProducer rp) throws Exception { super.postProcess(rp); m_ResultListener.postProcess(this); } /** * Prepare to generate results. The ResultProducer should call * preProcess(this) on the ResultListener it is to send results to. * * @throws Exception if an error occurs during preprocessing. */ public void preProcess() throws Exception { if (m_ResultProducer == null) { throw new Exception("No ResultProducer set"); } m_ResultProducer.setResultListener(this); m_ResultProducer.preProcess(); } /** * When this method is called, it indicates that no more requests to * generate results for the current experiment will be sent. The * ResultProducer should call preProcess(this) on the * ResultListener it is to send results to. * * @throws Exception if an error occurs */ public void postProcess() throws Exception { m_ResultProducer.postProcess(); } /** * Accepts results from a ResultProducer. * * @param rp the ResultProducer that generated the results * @param key an array of Objects (Strings or Doubles) that uniquely * identify a result for a given ResultProducer with given compatibilityState * @param result the results stored in an array. The objects stored in * the array may be Strings, Doubles, or null (for the missing value). * @throws Exception if the result could not be accepted. */ public void acceptResult(ResultProducer rp, Object [] key, Object [] result) throws Exception { if (m_ResultProducer != rp) { throw new Error("Unrecognized ResultProducer sending results!!"); } // System.err.println("DBRP::acceptResult"); // Is the result needed by the listener? boolean isRequiredByListener = m_ResultListener.isResultRequired(this, key); // Is the result already in the database? boolean isRequiredByDatabase = super.isResultRequired(rp, key); // Insert it into the database here if (isRequiredByDatabase) { // We could alternatively throw an exception if we only want values // that are already in the database if (result != null) { // null result could occur from a chain of doRunKeys calls super.acceptResult(rp, key, result); } } // Pass it on if (isRequiredByListener) { m_ResultListener.acceptResult(this, key, result); } } /** * Determines whether the results for a specified key must be * generated. * * @param rp the ResultProducer wanting to generate the results * @param key an array of Objects (Strings or Doubles) that uniquely * identify a result for a given ResultProducer with given compatibilityState * @return true if the result should be generated * @throws Exception if it could not be determined if the result * is needed. */ public boolean isResultRequired(ResultProducer rp, Object [] key) throws Exception { if (m_ResultProducer != rp) { throw new Error("Unrecognized ResultProducer sending results!!"); } // System.err.println("DBRP::isResultRequired"); // Is the result needed by the listener? boolean isRequiredByListener = m_ResultListener.isResultRequired(this, key); // Is the result already in the database? boolean isRequiredByDatabase = super.isResultRequired(rp, key); if (!isRequiredByDatabase && isRequiredByListener) { // Pass the result through to the listener Object [] result = getResultFromTable(m_ResultsTableName, rp, key); System.err.println("Got result from database: " + DatabaseUtils.arrayToString(result)); m_ResultListener.acceptResult(this, key, result); return false; } return (isRequiredByListener || isRequiredByDatabase); } /** * Gets the names of each of the columns produced for a single run. * * @return an array containing the name of each column * @throws Exception if something goes wrong. */ public String [] getKeyNames() throws Exception { return m_ResultProducer.getKeyNames(); } /** * Gets the data types of each of the columns produced for a single run. * This method should really be static. * * @return an array containing objects of the type of each column. The * objects should be Strings, or Doubles. * @throws Exception if something goes wrong. */ public Object [] getKeyTypes() throws Exception { return m_ResultProducer.getKeyTypes(); } /** * Gets the names of each of the columns produced for a single run. * A new result field is added for the number of results used to * produce each average. * If only averages are being produced the names are not altered, if * standard deviations are produced then "Dev_" and "Avg_" are prepended * to each result deviation and average field respectively. * * @return an array containing the name of each column * @throws Exception if something goes wrong. */ public String [] getResultNames() throws Exception { return m_ResultProducer.getResultNames(); } /** * Gets the data types of each of the columns produced for a single run. * * @return an array containing objects of the type of each column. The * objects should be Strings, or Doubles. * @throws Exception if something goes wrong. */ public Object [] getResultTypes() throws Exception { return m_ResultProducer.getResultTypes(); } /** * Gets a description of the internal settings of the result * producer, sufficient for distinguishing a ResultProducer * instance from another with different settings (ignoring * those settings set through this interface). For example, * a cross-validation ResultProducer may have a setting for the * number of folds. For a given state, the results produced should * be compatible. Typically if a ResultProducer is an OptionHandler, * this string will represent the command line arguments required * to set the ResultProducer to that state. * * @return the description of the ResultProducer state, or null * if no state is defined */ public String getCompatibilityState() { String result = ""; if (m_ResultProducer == null) { result += ""; } else { result += "-W " + m_ResultProducer.getClass().getName(); } result += " -- " + m_ResultProducer.getCompatibilityState(); return result.trim(); } /** * Returns an enumeration describing the available options.. * * @return an enumeration of all the available options. */ public Enumeration listOptions() { Vector newVector = new Vector(2); newVector.addElement(new Option( "\tThe name of the database field to cache over.\n" +"\teg: \"Fold\" (default none)", "F", 1, "-F ")); newVector.addElement(new Option( "\tThe full class name of a ResultProducer.\n" +"\teg: weka.experiment.CrossValidationResultProducer", "W", 1, "-W ")); if ((m_ResultProducer != null) && (m_ResultProducer instanceof OptionHandler)) { newVector.addElement(new Option( "", "", 0, "\nOptions specific to result producer " + m_ResultProducer.getClass().getName() + ":")); Enumeration enu = ((OptionHandler)m_ResultProducer).listOptions(); while (enu.hasMoreElements()) { newVector.addElement(enu.nextElement()); } } return newVector.elements(); } /** * Parses a given list of options.

* * Valid options are:

* *

 -F <field name>
   *  The name of the database field to cache over.
   *  eg: "Fold" (default none)
* *
 -W <class name>
   *  The full class name of a ResultProducer.
   *  eg: weka.experiment.CrossValidationResultProducer
* *
 
   * Options specific to result producer weka.experiment.CrossValidationResultProducer:
   * 
* *
 -X <number of folds>
   *  The number of folds to use for the cross-validation.
   *  (default 10)
* *
 -D
   * Save raw split evaluator output.
* *
 -O <file/directory name/path>
   *  The filename where raw output will be stored.
   *  If a directory name is specified then then individual
   *  outputs will be gzipped, otherwise all output will be
   *  zipped to the named file. Use in conjuction with -D. (default splitEvalutorOut.zip)
* *
 -W <class name>
   *  The full class name of a SplitEvaluator.
   *  eg: weka.experiment.ClassifierSplitEvaluator
* *
 
   * Options specific to split evaluator weka.experiment.ClassifierSplitEvaluator:
   * 
* *
 -W <class name>
   *  The full class name of the classifier.
   *  eg: weka.classifiers.bayes.NaiveBayes
* *
 -C <index>
   *  The index of the class for which IR statistics
   *  are to be output. (default 1)
* *
 -I <index>
   *  The index of an attribute to output in the
   *  results. This attribute should identify an
   *  instance in order to know which instances are
   *  in the test set of a cross validation. if 0
   *  no output (default 0).
* *
 -P
   *  Add target and prediction columns to the result
   *  for each fold.
* *
 
   * Options specific to classifier weka.classifiers.rules.ZeroR:
   * 
* *
 -D
   *  If set, classifier is run in debug mode and
   *  may output additional info to the console
* * * All option after -- will be passed to the result producer. * * @param options the list of options as an array of strings * @throws Exception if an option is not supported */ public void setOptions(String[] options) throws Exception { setCacheKeyName(Utils.getOption('F', options)); String rpName = Utils.getOption('W', options); if (rpName.length() == 0) { throw new Exception("A ResultProducer must be specified with" + " the -W option."); } // Do it first without options, so if an exception is thrown during // the option setting, listOptions will contain options for the actual // RP. setResultProducer((ResultProducer)Utils.forName( ResultProducer.class, rpName, null)); if (getResultProducer() instanceof OptionHandler) { ((OptionHandler) getResultProducer()) .setOptions(Utils.partitionOptions(options)); } } /** * Gets the current settings of the result producer. * * @return an array of strings suitable for passing to setOptions */ public String [] getOptions() { String [] seOptions = new String [0]; if ((m_ResultProducer != null) && (m_ResultProducer instanceof OptionHandler)) { seOptions = ((OptionHandler)m_ResultProducer).getOptions(); } String [] options = new String [seOptions.length + 8]; int current = 0; if (!getCacheKeyName().equals("")) { options[current++] = "-F"; options[current++] = getCacheKeyName(); } if (getResultProducer() != null) { options[current++] = "-W"; options[current++] = getResultProducer().getClass().getName(); } options[current++] = "--"; System.arraycopy(seOptions, 0, options, current, seOptions.length); current += seOptions.length; while (current < options.length) { options[current++] = ""; } return options; } /** * Set a list of method names for additional measures to look for * in SplitEvaluators. This could contain many measures (of which only a * subset may be produceable by the current resultProducer) if an experiment * is the type that iterates over a set of properties. * @param additionalMeasures an array of measure names, null if none */ public void setAdditionalMeasures(String [] additionalMeasures) { m_AdditionalMeasures = additionalMeasures; if (m_ResultProducer != null) { System.err.println("DatabaseResultProducer: setting additional " +"measures for " +"ResultProducer"); m_ResultProducer.setAdditionalMeasures(m_AdditionalMeasures); } } /** * Returns an enumeration of any additional measure names that might be * in the result producer * @return an enumeration of the measure names */ public Enumeration enumerateMeasures() { Vector newVector = new Vector(); if (m_ResultProducer instanceof AdditionalMeasureProducer) { Enumeration en = ((AdditionalMeasureProducer)m_ResultProducer). enumerateMeasures(); while (en.hasMoreElements()) { String mname = (String)en.nextElement(); newVector.addElement(mname); } } return newVector.elements(); } /** * Returns the value of the named measure * @param additionalMeasureName the name of the measure to query for its value * @return the value of the named measure * @throws IllegalArgumentException if the named measure is not supported */ public double getMeasure(String additionalMeasureName) { if (m_ResultProducer instanceof AdditionalMeasureProducer) { return ((AdditionalMeasureProducer)m_ResultProducer). getMeasure(additionalMeasureName); } else { throw new IllegalArgumentException("DatabaseResultProducer: " +"Can't return value for : "+additionalMeasureName +". "+m_ResultProducer.getClass().getName()+" " +"is not an AdditionalMeasureProducer"); } } /** * Sets the dataset that results will be obtained for. * * @param instances a value of type 'Instances'. */ public void setInstances(Instances instances) { m_Instances = instances; } /** * Sets the object to send results of each run to. * * @param listener a value of type 'ResultListener' */ public void setResultListener(ResultListener listener) { m_ResultListener = listener; } /** * Returns the tip text for this property * @return tip text for this property suitable for * displaying in the explorer/experimenter gui */ public String resultProducerTipText() { return "Set the result producer to use. If some results are not found " +"in the source database then this result producer is used to generate " +"them."; } /** * Get the ResultProducer. * * @return the ResultProducer. */ public ResultProducer getResultProducer() { return m_ResultProducer; } /** * Set the ResultProducer. * * @param newResultProducer new ResultProducer to use. */ public void setResultProducer(ResultProducer newResultProducer) { m_ResultProducer = newResultProducer; } /** * Gets a text descrption of the result producer. * * @return a text description of the result producer. */ public String toString() { String result = "DatabaseResultProducer: "; result += getCompatibilityState(); if (m_Instances == null) { result += ": "; } else { result += ": " + Utils.backQuoteChars(m_Instances.relationName()); } return result; } /** * Returns the revision string. * * @return the revision */ public String getRevision() { return RevisionUtils.extract("$Revision: 1.18 $"); } } // DatabaseResultProducer