[4] | 1 | /* |
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| 2 | * This program is free software; you can redistribute it and/or modify |
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| 3 | * it under the terms of the GNU General Public License as published by |
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| 4 | * the Free Software Foundation; either version 2 of the License, or |
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| 5 | * (at your option) any later version. |
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| 6 | * |
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| 7 | * This program is distributed in the hope that it will be useful, |
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| 8 | * but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 9 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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| 10 | * GNU General Public License for more details. |
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| 11 | * |
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| 12 | * You should have received a copy of the GNU General Public License |
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| 13 | * along with this program; if not, write to the Free Software |
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| 14 | * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. |
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| 15 | */ |
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| 16 | |
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| 17 | /* |
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| 18 | * EnsembleLibraryModel.java |
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| 19 | * Copyright (C) 2006 Robert Jung |
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| 20 | * |
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| 21 | */ |
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| 22 | |
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| 23 | package weka.classifiers; |
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| 24 | |
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| 25 | import weka.core.OptionHandler; |
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| 26 | import weka.core.RevisionHandler; |
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| 27 | import weka.core.RevisionUtils; |
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| 28 | import weka.core.Utils; |
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| 29 | import weka.gui.GenericObjectEditor; |
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| 30 | |
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| 31 | import java.beans.BeanInfo; |
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| 32 | import java.beans.IntrospectionException; |
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| 33 | import java.beans.Introspector; |
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| 34 | import java.beans.MethodDescriptor; |
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| 35 | import java.beans.PropertyDescriptor; |
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| 36 | import java.beans.PropertyEditor; |
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| 37 | import java.beans.PropertyEditorManager; |
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| 38 | import java.io.IOException; |
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| 39 | import java.io.ObjectInputStream; |
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| 40 | import java.io.ObjectOutputStream; |
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| 41 | import java.io.Serializable; |
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| 42 | import java.lang.reflect.InvocationTargetException; |
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| 43 | import java.lang.reflect.Method; |
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| 44 | |
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| 45 | /** |
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| 46 | * This class is a light wrapper that is meant to represent a |
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| 47 | * classifier in a classifier library. This simple base class |
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| 48 | * is intended only to store the class type and the parameters |
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| 49 | * for a specific "type" of classifier. You will need to |
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| 50 | * extend this class to add functionality specific to models |
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| 51 | * that have been trained on data (as we have for Ensemble Selection) |
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| 52 | * |
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| 53 | * @author Robert Jung (mrbobjung@gmail.com) |
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| 54 | * @version $Revision: 6041 $ |
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| 55 | */ |
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| 56 | public class EnsembleLibraryModel |
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| 57 | implements Serializable, RevisionHandler { |
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| 58 | |
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| 59 | /** this stores the class of the classifier */ |
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| 60 | //private Class m_ModelClass; |
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| 61 | |
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| 62 | /** |
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| 63 | * This is the serialVersionUID that SHOULD stay the same |
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| 64 | * so that future modified versions of this class will be |
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| 65 | * backwards compatible with older model versions. |
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| 66 | */ |
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| 67 | private static final long serialVersionUID = 7932816660173443200L; |
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| 68 | |
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| 69 | /** this is an array of options*/ |
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| 70 | protected Classifier m_Classifier; |
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| 71 | |
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| 72 | /** the description of this classifier*/ |
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| 73 | protected String m_DescriptionText; |
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| 74 | |
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| 75 | /** this is also saved separately */ |
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| 76 | protected String m_ErrorText; |
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| 77 | |
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| 78 | /** a boolean variable tracking whether or not this classifier was |
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| 79 | * able to be built successfully with the given set of options*/ |
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| 80 | protected boolean m_OptionsWereValid; |
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| 81 | |
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| 82 | /** this is stores redundantly to speed up the many operations that |
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| 83 | frequently need to get the model string representations (like JList |
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| 84 | renderers) */ |
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| 85 | protected String m_StringRepresentation; |
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| 86 | |
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| 87 | /** |
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| 88 | * Default Constructor |
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| 89 | */ |
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| 90 | public EnsembleLibraryModel() { |
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| 91 | super(); |
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| 92 | } |
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| 93 | |
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| 94 | /** |
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| 95 | * Initializes the class with the given classifier. |
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| 96 | * |
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| 97 | * @param classifier the classifier to use |
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| 98 | */ |
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| 99 | public EnsembleLibraryModel(Classifier classifier) { |
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| 100 | |
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| 101 | m_Classifier = classifier; |
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| 102 | |
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| 103 | //this may seem redundant and stupid, but it really is a good idea |
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| 104 | //to cache the stringRepresentation to minimize the amount of work |
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| 105 | //that needs to be done when these Models are rendered |
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| 106 | m_StringRepresentation = toString(); |
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| 107 | |
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| 108 | updateDescriptionText(); |
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| 109 | } |
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| 110 | |
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| 111 | /** |
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| 112 | * This method will attempt to instantiate this classifier with the given |
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| 113 | * options. If an exception is thrown from the setOptions method of the |
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| 114 | * classifier then the resulting exception text will be saved in the |
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| 115 | * description text string. |
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| 116 | */ |
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| 117 | public void testOptions() { |
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| 118 | |
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| 119 | Classifier testClassifier = null; |
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| 120 | try { |
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| 121 | testClassifier = ((Classifier) m_Classifier.getClass().newInstance()); |
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| 122 | } catch (InstantiationException e) { |
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| 123 | e.printStackTrace(); |
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| 124 | } catch (IllegalAccessException e) { |
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| 125 | e.printStackTrace(); |
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| 126 | } |
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| 127 | |
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| 128 | setOptionsWereValid(true); |
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| 129 | setErrorText(null); |
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| 130 | updateDescriptionText(); |
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| 131 | |
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| 132 | try { |
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| 133 | ((OptionHandler)testClassifier).setOptions(((OptionHandler)m_Classifier).getOptions()); |
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| 134 | } catch (Exception e) { |
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| 135 | |
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| 136 | setOptionsWereValid(false); |
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| 137 | setErrorText(e.getMessage()); |
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| 138 | } |
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| 139 | |
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| 140 | updateDescriptionText(); |
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| 141 | } |
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| 142 | |
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| 143 | /** |
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| 144 | * Returns the base classifier this library model represents. |
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| 145 | * |
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| 146 | * @return the base classifier |
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| 147 | */ |
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| 148 | public Classifier getClassifier() { |
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| 149 | return m_Classifier; |
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| 150 | } |
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| 151 | |
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| 152 | /** |
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| 153 | * getter for the string representation |
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| 154 | * |
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| 155 | * @return the string representation |
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| 156 | */ |
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| 157 | public String getStringRepresentation() { |
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| 158 | return m_StringRepresentation; |
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| 159 | } |
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| 160 | |
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| 161 | /** |
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| 162 | * setter for the description text |
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| 163 | * |
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| 164 | * @param descriptionText the description |
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| 165 | */ |
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| 166 | public void setDescriptionText(String descriptionText) { |
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| 167 | m_DescriptionText = descriptionText; |
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| 168 | } |
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| 169 | |
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| 170 | /** |
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| 171 | * getter for the string representation |
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| 172 | * |
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| 173 | * @return the description |
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| 174 | */ |
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| 175 | public String getDescriptionText() { |
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| 176 | return m_DescriptionText; |
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| 177 | } |
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| 178 | |
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| 179 | /** |
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| 180 | * setter for the error text |
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| 181 | * |
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| 182 | * @param errorText the error text |
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| 183 | */ |
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| 184 | public void setErrorText(String errorText) { |
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| 185 | this.m_ErrorText = errorText; |
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| 186 | } |
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| 187 | |
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| 188 | /** |
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| 189 | * getter for the error text |
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| 190 | * |
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| 191 | * @return the error text |
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| 192 | */ |
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| 193 | public String getErrorText() { |
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| 194 | return m_ErrorText; |
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| 195 | } |
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| 196 | |
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| 197 | /** |
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| 198 | * setter for the optionsWereValid member variable |
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| 199 | * |
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| 200 | * @param optionsWereValid if true, the options were valid |
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| 201 | */ |
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| 202 | public void setOptionsWereValid(boolean optionsWereValid) { |
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| 203 | this.m_OptionsWereValid = optionsWereValid; |
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| 204 | } |
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| 205 | |
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| 206 | /** |
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| 207 | * getter for the optionsWereValid member variable |
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| 208 | * |
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| 209 | * @return true if the options were valid |
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| 210 | */ |
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| 211 | public boolean getOptionsWereValid() { |
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| 212 | return m_OptionsWereValid; |
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| 213 | } |
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| 214 | |
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| 215 | /** |
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| 216 | * This method converts the current set of arguments and the |
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| 217 | * class name to a string value representing the command line |
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| 218 | * invocation |
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| 219 | * |
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| 220 | * @return a string representation of classname and options |
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| 221 | */ |
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| 222 | public String toString() { |
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| 223 | |
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| 224 | String str = m_Classifier.getClass().getName(); |
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| 225 | |
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| 226 | str += " " + Utils.joinOptions(((OptionHandler) m_Classifier).getOptions()); |
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| 227 | |
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| 228 | return str; |
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| 229 | |
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| 230 | } |
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| 231 | |
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| 232 | /** |
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| 233 | * getter for the modelClass |
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| 234 | * |
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| 235 | * @return the model class |
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| 236 | */ |
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| 237 | public Class getModelClass() { |
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| 238 | return m_Classifier.getClass(); |
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| 239 | } |
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| 240 | |
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| 241 | /** |
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| 242 | * getter for the classifier options |
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| 243 | * |
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| 244 | * @return the classifier options |
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| 245 | */ |
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| 246 | public String[] getOptions() { |
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| 247 | return ((OptionHandler)m_Classifier).getOptions(); |
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| 248 | } |
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| 249 | |
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| 250 | /** |
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| 251 | * Custom serialization method |
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| 252 | * |
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| 253 | * @param stream the stream to write the object to |
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| 254 | * @throws IOException if something goes wrong IO-wise |
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| 255 | */ |
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| 256 | private void writeObject(ObjectOutputStream stream) throws IOException { |
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| 257 | //stream.defaultWriteObject(); |
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| 258 | //stream.writeObject(b); |
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| 259 | |
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| 260 | //serialize the LibraryModel fields |
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| 261 | |
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| 262 | stream.writeObject(m_Classifier); |
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| 263 | |
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| 264 | stream.writeObject(m_DescriptionText); |
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| 265 | |
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| 266 | stream.writeObject(m_ErrorText); |
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| 267 | |
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| 268 | stream.writeObject(new Boolean(m_OptionsWereValid)); |
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| 269 | |
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| 270 | stream.writeObject(m_StringRepresentation); |
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| 271 | } |
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| 272 | |
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| 273 | /** |
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| 274 | * Custom serialization method |
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| 275 | * |
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| 276 | * @param stream the stream to write to |
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| 277 | * @throws IOException if something goes wrong IO-wise |
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| 278 | * @throws ClassNotFoundException if class couldn't be found |
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| 279 | */ |
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| 280 | private void readObject(ObjectInputStream stream) throws IOException, ClassNotFoundException { |
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| 281 | |
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| 282 | m_Classifier = (Classifier) stream.readObject(); |
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| 283 | |
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| 284 | m_DescriptionText = (String) stream.readObject(); |
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| 285 | |
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| 286 | m_ErrorText = (String) stream.readObject(); |
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| 287 | |
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| 288 | m_OptionsWereValid = ((Boolean) stream.readObject()).booleanValue(); |
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| 289 | |
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| 290 | m_StringRepresentation = (String) stream.readObject(); |
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| 291 | } |
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| 292 | |
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| 293 | /** |
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| 294 | * This method loops through all of the properties of a classifier to |
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| 295 | * build the html toolTipText that will show all of the property values |
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| 296 | * for this model. |
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| 297 | * |
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| 298 | * Note that this code is copied+adapted from the PropertySheetPanel |
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| 299 | * class. |
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| 300 | */ |
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| 301 | public void updateDescriptionText() { |
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| 302 | |
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| 303 | String toolTipText = new String("<html>"); |
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| 304 | |
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| 305 | if (!m_OptionsWereValid) { |
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| 306 | |
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| 307 | toolTipText += "<font COLOR=\"#FF0000\">" |
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| 308 | + "<b>Invalid Model:</b><br>" + m_ErrorText + "<br></font>"; |
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| 309 | } |
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| 310 | |
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| 311 | toolTipText += "<TABLE>"; |
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| 312 | |
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| 313 | PropertyDescriptor properties[] = null; |
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| 314 | MethodDescriptor methods[] = null; |
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| 315 | |
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| 316 | try { |
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| 317 | BeanInfo bi = Introspector.getBeanInfo(m_Classifier.getClass()); |
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| 318 | properties = bi.getPropertyDescriptors(); |
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| 319 | methods = bi.getMethodDescriptors(); |
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| 320 | } catch (IntrospectionException ex) { |
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| 321 | System.err.println("LibraryModel: Couldn't introspect"); |
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| 322 | return; |
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| 323 | } |
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| 324 | |
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| 325 | for (int i = 0; i < properties.length; i++) { |
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| 326 | |
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| 327 | if (properties[i].isHidden() || properties[i].isExpert()) { |
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| 328 | continue; |
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| 329 | } |
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| 330 | |
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| 331 | String name = properties[i].getDisplayName(); |
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| 332 | Class type = properties[i].getPropertyType(); |
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| 333 | Method getter = properties[i].getReadMethod(); |
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| 334 | Method setter = properties[i].getWriteMethod(); |
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| 335 | |
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| 336 | // Only display read/write properties. |
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| 337 | if (getter == null || setter == null) { |
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| 338 | continue; |
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| 339 | } |
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| 340 | |
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| 341 | try { |
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| 342 | Object args[] = {}; |
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| 343 | Object value = getter.invoke(m_Classifier, args); |
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| 344 | |
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| 345 | PropertyEditor editor = null; |
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| 346 | Class pec = properties[i].getPropertyEditorClass(); |
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| 347 | if (pec != null) { |
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| 348 | try { |
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| 349 | editor = (PropertyEditor) pec.newInstance(); |
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| 350 | } catch (Exception ex) { |
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| 351 | // Drop through. |
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| 352 | } |
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| 353 | } |
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| 354 | if (editor == null) { |
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| 355 | editor = PropertyEditorManager.findEditor(type); |
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| 356 | } |
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| 357 | //editors[i] = editor; |
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| 358 | |
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| 359 | // If we can't edit this component, skip it. |
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| 360 | if (editor == null) { |
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| 361 | continue; |
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| 362 | } |
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| 363 | if (editor instanceof GenericObjectEditor) { |
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| 364 | ((GenericObjectEditor) editor).setClassType(type); |
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| 365 | } |
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| 366 | |
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| 367 | // Don't try to set null values: |
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| 368 | if (value == null) { |
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| 369 | continue; |
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| 370 | } |
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| 371 | |
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| 372 | toolTipText += "<TR><TD>" + name + "</TD><TD>" |
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| 373 | + value.toString() + "</TD></TR>"; |
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| 374 | |
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| 375 | } catch (InvocationTargetException ex) { |
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| 376 | System.err.println("Skipping property " + name |
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| 377 | + " ; exception on target: " + ex.getTargetException()); |
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| 378 | ex.getTargetException().printStackTrace(); |
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| 379 | continue; |
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| 380 | } catch (Exception ex) { |
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| 381 | System.err.println("Skipping property " + name |
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| 382 | + " ; exception: " + ex); |
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| 383 | ex.printStackTrace(); |
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| 384 | continue; |
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| 385 | } |
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| 386 | } |
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| 387 | |
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| 388 | toolTipText += "</TABLE>"; |
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| 389 | toolTipText += "</html>"; |
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| 390 | m_DescriptionText = toolTipText; |
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| 391 | } |
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| 392 | |
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| 393 | /** |
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| 394 | * Returns the revision string. |
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| 395 | * |
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| 396 | * @return the revision |
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| 397 | */ |
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| 398 | public String getRevision() { |
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| 399 | return RevisionUtils.extract("$Revision: 6041 $"); |
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| 400 | } |
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| 401 | } |
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