[29] | 1 | /* |
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| 2 | * This program is free software; you can redistribute it and/or modify |
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| 3 | * it under the terms of the GNU General Public License as published by |
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| 4 | * the Free Software Foundation; either version 2 of the License, or |
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| 5 | * (at your option) any later version. |
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| 6 | * |
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| 7 | * This program is distributed in the hope that it will be useful, |
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| 8 | * but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 9 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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| 10 | * GNU General Public License for more details. |
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| 11 | * |
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| 12 | * You should have received a copy of the GNU General Public License |
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| 13 | * along with this program; if not, write to the Free Software |
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| 14 | * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA. |
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| 15 | */ |
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| 16 | |
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| 17 | /* |
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| 18 | * Copyright (C) 2006 University of Waikato |
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| 19 | */ |
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| 20 | |
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| 21 | package weka.associations; |
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| 22 | |
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| 23 | import weka.core.Attribute; |
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| 24 | import weka.core.CheckGOE; |
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| 25 | import weka.core.CheckOptionHandler; |
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| 26 | import weka.core.Instances; |
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| 27 | import weka.core.OptionHandler; |
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| 28 | import weka.core.CheckScheme.PostProcessor; |
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| 29 | import weka.test.Regression; |
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| 30 | |
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| 31 | import junit.framework.TestCase; |
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| 32 | |
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| 33 | /** |
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| 34 | * Abstract Test class for Associators. Internally it uses the class |
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| 35 | * <code>CheckAssociator</code> to determine success or failure of the |
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| 36 | * tests. It follows basically the <code>testsPerClassType</code> method. |
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| 37 | * |
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| 38 | * @author FracPete (fracpete at waikato dot ac dot nz) |
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| 39 | * @version $Revision: 1.7 $ |
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| 40 | * |
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| 41 | * @see CheckAssociator |
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| 42 | * @see CheckAssociator#testsPerClassType(int, boolean, boolean) |
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| 43 | * @see PostProcessor |
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| 44 | */ |
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| 45 | public abstract class AbstractAssociatorTest |
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| 46 | extends TestCase { |
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| 47 | |
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| 48 | /** The Associator to be tested */ |
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| 49 | protected Associator m_Associator; |
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| 50 | |
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| 51 | /** For testing the Associator */ |
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| 52 | protected CheckAssociator m_Tester; |
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| 53 | |
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| 54 | /** whether Associator handles weighted instances */ |
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| 55 | protected boolean m_weightedInstancesHandler; |
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| 56 | |
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| 57 | /** whether Associator handles multi-instance data */ |
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| 58 | protected boolean m_multiInstanceHandler; |
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| 59 | |
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| 60 | /** the number of classes to test with testNClasses() |
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| 61 | * @see #testNClasses() */ |
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| 62 | protected int m_NClasses; |
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| 63 | |
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| 64 | /** whether to run CheckAssociator in DEBUG mode */ |
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| 65 | protected boolean DEBUG = false; |
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| 66 | |
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| 67 | /** the attribute type with the lowest value */ |
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| 68 | protected final static int FIRST_CLASSTYPE = Attribute.NUMERIC; |
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| 69 | |
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| 70 | /** the attribute type with the highest value */ |
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| 71 | protected final static int LAST_CLASSTYPE = Attribute.RELATIONAL; |
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| 72 | |
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| 73 | /** wether Associator can predict nominal attributes (array index is attribute type of class) */ |
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| 74 | protected boolean[] m_NominalPredictors; |
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| 75 | |
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| 76 | /** wether Associator can predict numeric attributes (array index is attribute type of class) */ |
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| 77 | protected boolean[] m_NumericPredictors; |
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| 78 | |
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| 79 | /** wether Associator can predict string attributes (array index is attribute type of class) */ |
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| 80 | protected boolean[] m_StringPredictors; |
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| 81 | |
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| 82 | /** wether Associator can predict date attributes (array index is attribute type of class) */ |
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| 83 | protected boolean[] m_DatePredictors; |
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| 84 | |
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| 85 | /** wether Associator can predict relational attributes (array index is attribute type of class) */ |
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| 86 | protected boolean[] m_RelationalPredictors; |
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| 87 | |
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| 88 | /** whether Associator handles missing values */ |
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| 89 | protected boolean[] m_handleMissingPredictors; |
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| 90 | |
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| 91 | /** whether Associator handles class with only missing values */ |
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| 92 | protected boolean[] m_handleMissingClass; |
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| 93 | |
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| 94 | /** the results of the regression tests */ |
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| 95 | protected String[] m_RegressionResults; |
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| 96 | |
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| 97 | /** the OptionHandler tester */ |
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| 98 | protected CheckOptionHandler m_OptionTester; |
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| 99 | |
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| 100 | /** for testing GOE stuff */ |
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| 101 | protected CheckGOE m_GOETester; |
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| 102 | |
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| 103 | /** |
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| 104 | * Constructs the <code>AbstractAssociatorTest</code>. Called by subclasses. |
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| 105 | * |
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| 106 | * @param name the name of the test class |
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| 107 | */ |
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| 108 | public AbstractAssociatorTest(String name) { |
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| 109 | super(name); |
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| 110 | } |
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| 111 | |
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| 112 | /** |
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| 113 | * returns a custom PostProcessor for the CheckClassifier datasets, currently |
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| 114 | * only null. |
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| 115 | * |
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| 116 | * @return a custom PostProcessor, if necessary |
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| 117 | * @see PostProcessor |
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| 118 | */ |
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| 119 | protected PostProcessor getPostProcessor() { |
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| 120 | return null; |
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| 121 | } |
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| 122 | |
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| 123 | /** |
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| 124 | * configures the CheckAssociator instance used throughout the tests |
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| 125 | * |
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| 126 | * @return the fully configured CheckAssociator instance used for testing |
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| 127 | */ |
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| 128 | protected CheckAssociator getTester() { |
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| 129 | CheckAssociator result; |
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| 130 | |
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| 131 | result = new CheckAssociator(); |
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| 132 | result.setSilent(true); |
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| 133 | result.setAssociator(m_Associator); |
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| 134 | result.setNumInstances(20); |
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| 135 | result.setDebug(DEBUG); |
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| 136 | result.setPostProcessor(getPostProcessor()); |
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| 137 | |
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| 138 | return result; |
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| 139 | } |
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| 140 | |
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| 141 | /** |
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| 142 | * Configures the CheckOptionHandler used for testing the optionhandling. |
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| 143 | * Sets the Associator returned from the getAssociator() method. |
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| 144 | * |
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| 145 | * @return the fully configured CheckOptionHandler |
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| 146 | * @see #getAssociator() |
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| 147 | */ |
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| 148 | protected CheckOptionHandler getOptionTester() { |
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| 149 | CheckOptionHandler result; |
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| 150 | |
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| 151 | result = new CheckOptionHandler(); |
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| 152 | if (getAssociator() instanceof OptionHandler) |
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| 153 | result.setOptionHandler((OptionHandler) getAssociator()); |
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| 154 | else |
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| 155 | result.setOptionHandler(null); |
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| 156 | result.setUserOptions(new String[0]); |
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| 157 | result.setSilent(true); |
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| 158 | |
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| 159 | return result; |
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| 160 | } |
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| 161 | |
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| 162 | /** |
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| 163 | * Configures the CheckGOE used for testing GOE stuff. |
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| 164 | * Sets the Associator returned from the getAssociator() method. |
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| 165 | * |
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| 166 | * @return the fully configured CheckGOE |
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| 167 | * @see #getAssociator() |
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| 168 | */ |
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| 169 | protected CheckGOE getGOETester() { |
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| 170 | CheckGOE result; |
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| 171 | |
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| 172 | result = new CheckGOE(); |
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| 173 | result.setObject(getAssociator()); |
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| 174 | result.setSilent(true); |
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| 175 | |
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| 176 | return result; |
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| 177 | } |
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| 178 | |
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| 179 | /** |
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| 180 | * Called by JUnit before each test method. This implementation creates |
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| 181 | * the default Associator to test and loads a test set of Instances. |
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| 182 | * |
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| 183 | * @exception Exception if an error occurs reading the example instances. |
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| 184 | */ |
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| 185 | protected void setUp() throws Exception { |
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| 186 | m_Associator = getAssociator(); |
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| 187 | m_Tester = getTester(); |
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| 188 | m_OptionTester = getOptionTester(); |
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| 189 | m_GOETester = getGOETester(); |
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| 190 | |
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| 191 | m_weightedInstancesHandler = m_Tester.weightedInstancesHandler()[0]; |
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| 192 | m_multiInstanceHandler = m_Tester.multiInstanceHandler()[0]; |
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| 193 | // LAST_CLASSTYPE+1 = no class attribute |
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| 194 | m_NominalPredictors = new boolean[LAST_CLASSTYPE + 2]; |
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| 195 | m_NumericPredictors = new boolean[LAST_CLASSTYPE + 2]; |
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| 196 | m_StringPredictors = new boolean[LAST_CLASSTYPE + 2]; |
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| 197 | m_DatePredictors = new boolean[LAST_CLASSTYPE + 2]; |
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| 198 | m_RelationalPredictors = new boolean[LAST_CLASSTYPE + 2]; |
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| 199 | m_handleMissingPredictors = new boolean[LAST_CLASSTYPE + 2]; |
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| 200 | m_handleMissingClass = new boolean[LAST_CLASSTYPE + 2]; |
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| 201 | m_RegressionResults = new String[LAST_CLASSTYPE + 2]; |
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| 202 | m_NClasses = 4; |
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| 203 | |
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| 204 | // initialize attributes |
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| 205 | checkAttributes(true, false, false, false, false, false); |
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| 206 | checkAttributes(false, true, false, false, false, false); |
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| 207 | checkAttributes(false, false, true, false, false, false); |
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| 208 | checkAttributes(false, false, false, true, false, false); |
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| 209 | checkAttributes(false, false, false, false, true, false); |
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| 210 | |
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| 211 | // initialize missing values handling |
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| 212 | for (int i = FIRST_CLASSTYPE; i <= LAST_CLASSTYPE + 1; i++) { |
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| 213 | // does the scheme support this type of class at all? |
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| 214 | if (!canPredict(i)) |
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| 215 | continue; |
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| 216 | |
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| 217 | // 20% missing |
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| 218 | m_handleMissingPredictors[i] = checkMissingPredictors(i, 20, false); |
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| 219 | if (i <= LAST_CLASSTYPE) |
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| 220 | m_handleMissingClass[i] = checkMissingClass(i, 20, false); |
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| 221 | } |
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| 222 | } |
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| 223 | |
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| 224 | /** Called by JUnit after each test method */ |
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| 225 | protected void tearDown() { |
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| 226 | m_Associator = null; |
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| 227 | m_Tester = null; |
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| 228 | m_OptionTester = null; |
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| 229 | m_GOETester = null; |
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| 230 | |
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| 231 | m_weightedInstancesHandler = false; |
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| 232 | m_NominalPredictors = null; |
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| 233 | m_NumericPredictors = null; |
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| 234 | m_StringPredictors = null; |
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| 235 | m_DatePredictors = null; |
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| 236 | m_RelationalPredictors = null; |
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| 237 | m_handleMissingPredictors = null; |
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| 238 | m_handleMissingClass = null; |
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| 239 | m_RegressionResults = null; |
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| 240 | m_NClasses = 4; |
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| 241 | } |
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| 242 | |
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| 243 | /** |
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| 244 | * Used to create an instance of a specific Associator. |
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| 245 | * |
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| 246 | * @return a suitably configured <code>Associator</code> value |
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| 247 | */ |
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| 248 | public abstract Associator getAssociator(); |
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| 249 | |
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| 250 | /** |
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| 251 | * checks whether at least one attribute type can be handled with the |
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| 252 | * given class type |
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| 253 | * |
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| 254 | * @param type the class type to check for |
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| 255 | * @return true if at least one attribute type can be predicted with |
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| 256 | * the given class |
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| 257 | */ |
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| 258 | protected boolean canPredict(int type) { |
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| 259 | return m_NominalPredictors[type] |
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| 260 | || m_NumericPredictors[type] |
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| 261 | || m_StringPredictors[type] |
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| 262 | || m_DatePredictors[type] |
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| 263 | || m_RelationalPredictors[type]; |
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| 264 | } |
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| 265 | |
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| 266 | /** |
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| 267 | * returns a string for the class type |
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| 268 | * |
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| 269 | * @param type the class type |
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| 270 | * @return the class type as string |
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| 271 | */ |
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| 272 | protected String getClassTypeString(int type) { |
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| 273 | if (type == LAST_CLASSTYPE + 1) |
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| 274 | return "no"; |
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| 275 | else |
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| 276 | return CheckAssociator.attributeTypeToString(type); |
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| 277 | } |
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| 278 | |
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| 279 | /** |
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| 280 | * tests whether the Associator can handle certain attributes and if not, |
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| 281 | * if the exception is OK |
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| 282 | * |
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| 283 | * @param nom to check for nominal attributes |
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| 284 | * @param num to check for numeric attributes |
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| 285 | * @param str to check for string attributes |
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| 286 | * @param dat to check for date attributes |
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| 287 | * @param rel to check for relational attributes |
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| 288 | * @param allowFail whether a junit fail can be executed |
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| 289 | * @see CheckAssociator#canPredict(boolean, boolean, boolean, boolean, boolean, boolean, int) |
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| 290 | * @see CheckAssociator#testsPerClassType(int, boolean, boolean) |
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| 291 | */ |
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| 292 | protected void checkAttributes(boolean nom, boolean num, boolean str, |
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| 293 | boolean dat, boolean rel, |
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| 294 | boolean allowFail) { |
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| 295 | boolean[] result; |
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| 296 | String att; |
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| 297 | int i; |
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| 298 | int type; |
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| 299 | |
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| 300 | // determine text for type of attributes |
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| 301 | att = ""; |
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| 302 | if (nom) |
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| 303 | att = "nominal"; |
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| 304 | else if (num) |
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| 305 | att = "numeric"; |
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| 306 | else if (str) |
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| 307 | att = "string"; |
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| 308 | else if (dat) |
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| 309 | att = "date"; |
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| 310 | else if (rel) |
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| 311 | att = "relational"; |
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| 312 | |
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| 313 | for (i = FIRST_CLASSTYPE; i <= LAST_CLASSTYPE + 1; i++) { |
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| 314 | if (i == LAST_CLASSTYPE + 1) |
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| 315 | type = CheckAssociator.NO_CLASS; |
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| 316 | else |
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| 317 | type = i; |
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| 318 | result = m_Tester.canPredict(nom, num, str, dat, rel, m_multiInstanceHandler, type); |
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| 319 | |
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| 320 | if (nom) |
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| 321 | m_NominalPredictors[i] = result[0]; |
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| 322 | else if (num) |
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| 323 | m_NumericPredictors[i] = result[0]; |
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| 324 | else if (str) |
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| 325 | m_StringPredictors[i] = result[0]; |
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| 326 | else if (dat) |
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| 327 | m_DatePredictors[i] = result[0]; |
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| 328 | else if (rel) |
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| 329 | m_RelationalPredictors[i] = result[0]; |
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| 330 | |
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| 331 | if (!result[0] && !result[1] && allowFail) |
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| 332 | fail("Error handling " + att + " attributes (" + getClassTypeString(i) |
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| 333 | + " class)!"); |
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| 334 | } |
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| 335 | } |
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| 336 | |
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| 337 | /** |
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| 338 | * tests whether the Associator can handle different types of attributes and |
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| 339 | * if not, if the exception is OK |
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| 340 | * |
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| 341 | * @see #checkAttributes(boolean, boolean, boolean, boolean, boolean, boolean) |
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| 342 | */ |
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| 343 | public void testAttributes() { |
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| 344 | // nominal |
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| 345 | checkAttributes(true, false, false, false, false, true); |
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| 346 | // numeric |
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| 347 | checkAttributes(false, true, false, false, false, true); |
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| 348 | // string |
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| 349 | checkAttributes(false, false, true, false, false, true); |
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| 350 | // date |
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| 351 | checkAttributes(false, false, false, true, false, true); |
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| 352 | // relational |
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| 353 | if (!m_multiInstanceHandler) |
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| 354 | checkAttributes(false, false, false, false, true, true); |
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| 355 | } |
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| 356 | |
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| 357 | /** |
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| 358 | * tests whether the scheme declares a serialVersionUID. |
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| 359 | */ |
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| 360 | public void testSerialVersionUID() { |
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| 361 | boolean[] result; |
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| 362 | |
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| 363 | result = m_Tester.declaresSerialVersionUID(); |
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| 364 | |
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| 365 | if (!result[0]) |
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| 366 | fail("Doesn't declare serialVersionUID!"); |
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| 367 | } |
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| 368 | |
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| 369 | /** |
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| 370 | * tests whether the Associator handles instance weights correctly |
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| 371 | * |
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| 372 | * @see CheckAssociator#instanceWeights(boolean, boolean, boolean, boolean, boolean, boolean, int) |
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| 373 | * @see CheckAssociator#testsPerClassType(int, boolean, boolean) |
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| 374 | */ |
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| 375 | public void testInstanceWeights() { |
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| 376 | boolean[] result; |
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| 377 | int i; |
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| 378 | int type; |
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| 379 | |
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| 380 | if (m_weightedInstancesHandler) { |
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| 381 | for (i = FIRST_CLASSTYPE; i <= LAST_CLASSTYPE + 1; i++) { |
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| 382 | // does the Associator support this type of class at all? |
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| 383 | if (!canPredict(i)) |
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| 384 | continue; |
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| 385 | |
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| 386 | if (i == LAST_CLASSTYPE + 1) |
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| 387 | type = CheckAssociator.NO_CLASS; |
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| 388 | else |
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| 389 | type = i; |
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| 390 | |
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| 391 | result = m_Tester.instanceWeights( |
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| 392 | m_NominalPredictors[i], |
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| 393 | m_NumericPredictors[i], |
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| 394 | m_StringPredictors[i], |
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| 395 | m_DatePredictors[i], |
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| 396 | m_RelationalPredictors[i], |
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| 397 | m_multiInstanceHandler, |
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| 398 | type); |
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| 399 | |
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| 400 | if (!result[0]) |
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| 401 | System.err.println("Error handling instance weights (" + getClassTypeString(i) |
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| 402 | + " class)!"); |
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| 403 | } |
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| 404 | } |
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| 405 | } |
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| 406 | |
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| 407 | /** |
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| 408 | * tests whether Associator handles N classes |
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| 409 | * |
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| 410 | * @see CheckAssociator#canHandleNClasses(boolean, boolean, boolean, boolean, boolean, boolean, int) |
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| 411 | * @see CheckAssociator#testsPerClassType(int, boolean, boolean) |
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| 412 | * @see #m_NClasses |
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| 413 | */ |
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| 414 | public void testNClasses() { |
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| 415 | boolean[] result; |
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| 416 | |
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| 417 | if (!canPredict(Attribute.NOMINAL)) |
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| 418 | return; |
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| 419 | |
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| 420 | result = m_Tester.canHandleNClasses( |
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| 421 | m_NominalPredictors[Attribute.NOMINAL], |
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| 422 | m_NumericPredictors[Attribute.NOMINAL], |
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| 423 | m_StringPredictors[Attribute.NOMINAL], |
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| 424 | m_DatePredictors[Attribute.NOMINAL], |
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| 425 | m_RelationalPredictors[Attribute.NOMINAL], |
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| 426 | m_multiInstanceHandler, |
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| 427 | m_NClasses); |
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| 428 | |
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| 429 | if (!result[0] && !result[1]) |
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| 430 | fail("Error handling " + m_NClasses + " classes!"); |
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| 431 | } |
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| 432 | |
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| 433 | /** |
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| 434 | * checks whether the Associator can handle the class attribute at a given |
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| 435 | * position (0-based index, -1 means last). |
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| 436 | * |
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| 437 | * @param type the class type |
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| 438 | * @param position the position of the class attribute (0-based, -1 means last) |
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| 439 | * @return true if the Associator can handle it |
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| 440 | */ |
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| 441 | protected boolean checkClassAsNthAttribute(int type, int position) { |
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| 442 | boolean[] result; |
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| 443 | String indexStr; |
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| 444 | |
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| 445 | result = m_Tester.canHandleClassAsNthAttribute( |
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| 446 | m_NominalPredictors[type], |
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| 447 | m_NumericPredictors[type], |
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| 448 | m_StringPredictors[type], |
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| 449 | m_DatePredictors[type], |
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| 450 | m_RelationalPredictors[type], |
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| 451 | m_multiInstanceHandler, |
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| 452 | type, |
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| 453 | position); |
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| 454 | |
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| 455 | if (position == -1) |
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| 456 | indexStr = "last"; |
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| 457 | else |
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| 458 | indexStr = (position + 1) + "."; |
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| 459 | |
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| 460 | if (!result[0] && !result[1]) |
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| 461 | fail("Error handling class as " + indexStr + " attribute (" |
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| 462 | + getClassTypeString(type) + " class)!"); |
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| 463 | |
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| 464 | return result[0]; |
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| 465 | } |
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| 466 | |
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| 467 | /** |
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| 468 | * Tests whether the Associator can handle class attributes as Nth |
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| 469 | * attribute. In case of multi-instance Associators it performs no tests, |
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| 470 | * since the multi-instance data has a fixed format (bagID,bag,class). |
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| 471 | * |
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| 472 | * @see CheckAssociator#canHandleClassAsNthAttribute(boolean, boolean, boolean, boolean, boolean, boolean, int, int) |
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| 473 | * @see CheckAssociator#testsPerClassType(int, boolean, boolean) |
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| 474 | */ |
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| 475 | public void testClassAsNthAttribute() { |
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| 476 | int i; |
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| 477 | |
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| 478 | // multi-Instance data has fixed format! |
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| 479 | if (m_multiInstanceHandler) |
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| 480 | return; |
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| 481 | |
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| 482 | for (i = FIRST_CLASSTYPE; i <= LAST_CLASSTYPE; i++) { |
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| 483 | // does the Associator support this type of class at all? |
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| 484 | if (!canPredict(i)) |
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| 485 | continue; |
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| 486 | |
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| 487 | // first attribute |
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| 488 | checkClassAsNthAttribute(i, 0); |
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| 489 | |
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| 490 | // second attribute |
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| 491 | checkClassAsNthAttribute(i, 1); |
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| 492 | } |
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| 493 | } |
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| 494 | |
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| 495 | /** |
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| 496 | * tests whether the Associator can handle zero training instances |
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| 497 | * |
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| 498 | * @see CheckAssociator#canHandleZeroTraining(boolean, boolean, boolean, boolean, boolean, boolean, int) |
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| 499 | * @see CheckAssociator#testsPerClassType(int, boolean, boolean) |
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| 500 | */ |
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| 501 | public void testZeroTraining() { |
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| 502 | boolean[] result; |
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| 503 | int i; |
---|
| 504 | int type; |
---|
| 505 | |
---|
| 506 | for (i = FIRST_CLASSTYPE; i <= LAST_CLASSTYPE + 1; i++) { |
---|
| 507 | // does the Associator support this type of class at all? |
---|
| 508 | if (!canPredict(i)) |
---|
| 509 | continue; |
---|
| 510 | |
---|
| 511 | if (i == LAST_CLASSTYPE + 1) |
---|
| 512 | type = CheckAssociator.NO_CLASS; |
---|
| 513 | else |
---|
| 514 | type = i; |
---|
| 515 | |
---|
| 516 | result = m_Tester.canHandleZeroTraining( |
---|
| 517 | m_NominalPredictors[i], |
---|
| 518 | m_NumericPredictors[i], |
---|
| 519 | m_StringPredictors[i], |
---|
| 520 | m_DatePredictors[i], |
---|
| 521 | m_RelationalPredictors[i], |
---|
| 522 | m_multiInstanceHandler, |
---|
| 523 | type); |
---|
| 524 | |
---|
| 525 | if (!result[0] && !result[1]) |
---|
| 526 | fail("Error handling zero training instances (" + getClassTypeString(i) |
---|
| 527 | + " class)!"); |
---|
| 528 | } |
---|
| 529 | } |
---|
| 530 | |
---|
| 531 | /** |
---|
| 532 | * checks whether the Associator can handle the given percentage of |
---|
| 533 | * missing predictors |
---|
| 534 | * |
---|
| 535 | * @param type the class type |
---|
| 536 | * @param percent the percentage of missing predictors |
---|
| 537 | * @param allowFail if true a fail statement may be executed |
---|
| 538 | * @return true if the Associator can handle it |
---|
| 539 | */ |
---|
| 540 | protected boolean checkMissingPredictors(int type, int percent, boolean allowFail) { |
---|
| 541 | boolean[] result; |
---|
| 542 | int classType; |
---|
| 543 | |
---|
| 544 | if (type == LAST_CLASSTYPE + 1) |
---|
| 545 | classType = CheckAssociator.NO_CLASS; |
---|
| 546 | else |
---|
| 547 | classType = type; |
---|
| 548 | |
---|
| 549 | result = m_Tester.canHandleMissing( |
---|
| 550 | m_NominalPredictors[type], |
---|
| 551 | m_NumericPredictors[type], |
---|
| 552 | m_StringPredictors[type], |
---|
| 553 | m_DatePredictors[type], |
---|
| 554 | m_RelationalPredictors[type], |
---|
| 555 | m_multiInstanceHandler, |
---|
| 556 | classType, |
---|
| 557 | true, |
---|
| 558 | false, |
---|
| 559 | percent); |
---|
| 560 | |
---|
| 561 | if (allowFail) { |
---|
| 562 | if (!result[0] && !result[1]) |
---|
| 563 | fail("Error handling " + percent + "% missing predictors (" |
---|
| 564 | + getClassTypeString(type) + " class)!"); |
---|
| 565 | } |
---|
| 566 | |
---|
| 567 | return result[0]; |
---|
| 568 | } |
---|
| 569 | |
---|
| 570 | /** |
---|
| 571 | * tests whether the Associator can handle missing predictors (20% and 100%) |
---|
| 572 | * |
---|
| 573 | * @see CheckAssociator#canHandleMissing(boolean, boolean, boolean, boolean, boolean, boolean, int, boolean, boolean, int) |
---|
| 574 | * @see CheckAssociator#testsPerClassType(int, boolean, boolean) |
---|
| 575 | */ |
---|
| 576 | public void testMissingPredictors() { |
---|
| 577 | int i; |
---|
| 578 | |
---|
| 579 | for (i = FIRST_CLASSTYPE; i <= LAST_CLASSTYPE + 1; i++) { |
---|
| 580 | // does the Associator support this type of class at all? |
---|
| 581 | if (!canPredict(i)) |
---|
| 582 | continue; |
---|
| 583 | |
---|
| 584 | // 20% missing |
---|
| 585 | checkMissingPredictors(i, 20, true); |
---|
| 586 | |
---|
| 587 | // 100% missing |
---|
| 588 | if (m_handleMissingPredictors[i]) |
---|
| 589 | checkMissingPredictors(i, 100, true); |
---|
| 590 | } |
---|
| 591 | } |
---|
| 592 | |
---|
| 593 | /** |
---|
| 594 | * checks whether the Associator can handle the given percentage of |
---|
| 595 | * missing class labels |
---|
| 596 | * |
---|
| 597 | * @param type the class type |
---|
| 598 | * @param percent the percentage of missing class labels |
---|
| 599 | * @param allowFail if true a fail statement may be executed |
---|
| 600 | * @return true if the Associator can handle it |
---|
| 601 | */ |
---|
| 602 | protected boolean checkMissingClass(int type, int percent, boolean allowFail) { |
---|
| 603 | boolean[] result; |
---|
| 604 | |
---|
| 605 | result = m_Tester.canHandleMissing( |
---|
| 606 | m_NominalPredictors[type], |
---|
| 607 | m_NumericPredictors[type], |
---|
| 608 | m_StringPredictors[type], |
---|
| 609 | m_DatePredictors[type], |
---|
| 610 | m_RelationalPredictors[type], |
---|
| 611 | m_multiInstanceHandler, |
---|
| 612 | type, |
---|
| 613 | false, |
---|
| 614 | true, |
---|
| 615 | percent); |
---|
| 616 | |
---|
| 617 | if (allowFail) { |
---|
| 618 | if (!result[0] && !result[1]) |
---|
| 619 | fail("Error handling " + percent + "% missing class labels (" |
---|
| 620 | + getClassTypeString(type) + " class)!"); |
---|
| 621 | } |
---|
| 622 | |
---|
| 623 | return result[0]; |
---|
| 624 | } |
---|
| 625 | |
---|
| 626 | /** |
---|
| 627 | * tests whether the Associator can handle missing class values (20% and |
---|
| 628 | * 100%) |
---|
| 629 | * |
---|
| 630 | * @see CheckAssociator#canHandleMissing(boolean, boolean, boolean, boolean, boolean, boolean, int, boolean, boolean, int) |
---|
| 631 | * @see CheckAssociator#testsPerClassType(int, boolean, boolean) |
---|
| 632 | */ |
---|
| 633 | public void testMissingClass() { |
---|
| 634 | int i; |
---|
| 635 | |
---|
| 636 | for (i = FIRST_CLASSTYPE; i <= LAST_CLASSTYPE; i++) { |
---|
| 637 | // does the Associator support this type of class at all? |
---|
| 638 | if (!canPredict(i)) |
---|
| 639 | continue; |
---|
| 640 | |
---|
| 641 | // 20% missing |
---|
| 642 | checkMissingClass(i, 20, true); |
---|
| 643 | |
---|
| 644 | // 100% missing |
---|
| 645 | if (m_handleMissingClass[i]) |
---|
| 646 | checkMissingClass(i, 100, true); |
---|
| 647 | } |
---|
| 648 | } |
---|
| 649 | |
---|
| 650 | /** |
---|
| 651 | * tests whether the Associator correctly initializes in the |
---|
| 652 | * buildAssociator method |
---|
| 653 | * |
---|
| 654 | * @see CheckAssociator#correctBuildInitialisation(boolean, boolean, boolean, boolean, boolean, boolean, int) |
---|
| 655 | * @see CheckAssociator#testsPerClassType(int, boolean, boolean) |
---|
| 656 | */ |
---|
| 657 | public void testBuildInitialization() { |
---|
| 658 | boolean[] result; |
---|
| 659 | int i; |
---|
| 660 | int type; |
---|
| 661 | |
---|
| 662 | for (i = FIRST_CLASSTYPE; i <= LAST_CLASSTYPE + 1; i++) { |
---|
| 663 | // does the Associator support this type of class at all? |
---|
| 664 | if (!canPredict(i)) |
---|
| 665 | continue; |
---|
| 666 | |
---|
| 667 | if (i == LAST_CLASSTYPE + 1) |
---|
| 668 | type = CheckAssociator.NO_CLASS; |
---|
| 669 | else |
---|
| 670 | type = i; |
---|
| 671 | |
---|
| 672 | result = m_Tester.correctBuildInitialisation( |
---|
| 673 | m_NominalPredictors[i], |
---|
| 674 | m_NumericPredictors[i], |
---|
| 675 | m_StringPredictors[i], |
---|
| 676 | m_DatePredictors[i], |
---|
| 677 | m_RelationalPredictors[i], |
---|
| 678 | m_multiInstanceHandler, |
---|
| 679 | type); |
---|
| 680 | |
---|
| 681 | if (!result[0] && !result[1]) |
---|
| 682 | fail("Incorrect build initialization (" + getClassTypeString(i) |
---|
| 683 | + " class)!"); |
---|
| 684 | } |
---|
| 685 | } |
---|
| 686 | |
---|
| 687 | /** |
---|
| 688 | * tests whether the Associator alters the training set during training. |
---|
| 689 | * |
---|
| 690 | * @see CheckAssociator#datasetIntegrity(boolean, boolean, boolean, boolean, boolean, boolean, int, boolean, boolean) |
---|
| 691 | * @see CheckAssociator#testsPerClassType(int, boolean, boolean) |
---|
| 692 | */ |
---|
| 693 | public void testDatasetIntegrity() { |
---|
| 694 | boolean[] result; |
---|
| 695 | int i; |
---|
| 696 | int type; |
---|
| 697 | |
---|
| 698 | for (i = FIRST_CLASSTYPE; i <= LAST_CLASSTYPE + 1; i++) { |
---|
| 699 | // does the Associator support this type of class at all? |
---|
| 700 | if (!canPredict(i)) |
---|
| 701 | continue; |
---|
| 702 | |
---|
| 703 | if (i == LAST_CLASSTYPE + 1) |
---|
| 704 | type = CheckAssociator.NO_CLASS; |
---|
| 705 | else |
---|
| 706 | type = i; |
---|
| 707 | |
---|
| 708 | result = m_Tester.datasetIntegrity( |
---|
| 709 | m_NominalPredictors[i], |
---|
| 710 | m_NumericPredictors[i], |
---|
| 711 | m_StringPredictors[i], |
---|
| 712 | m_DatePredictors[i], |
---|
| 713 | m_RelationalPredictors[i], |
---|
| 714 | m_multiInstanceHandler, |
---|
| 715 | type, |
---|
| 716 | m_handleMissingPredictors[i], |
---|
| 717 | m_handleMissingClass[i]); |
---|
| 718 | |
---|
| 719 | if (!result[0] && !result[1]) |
---|
| 720 | fail("Training set is altered during training (" |
---|
| 721 | + getClassTypeString(i) + " class)!"); |
---|
| 722 | } |
---|
| 723 | } |
---|
| 724 | |
---|
| 725 | /** |
---|
| 726 | * Builds a model using the current Associator using the given data and |
---|
| 727 | * returns the produced output. |
---|
| 728 | * TODO: unified rules as output instead of toString() result??? |
---|
| 729 | * |
---|
| 730 | * @param data the instances to test the Associator on |
---|
| 731 | * @return a String containing the output of the Associator. |
---|
| 732 | * @throws Exception if something goes wrong |
---|
| 733 | */ |
---|
| 734 | protected String useAssociator(Instances data) throws Exception { |
---|
| 735 | Associator associator = null; |
---|
| 736 | |
---|
| 737 | try { |
---|
| 738 | associator = AbstractAssociator.makeCopy(m_Associator); |
---|
| 739 | } |
---|
| 740 | catch (Exception e) { |
---|
| 741 | e.printStackTrace(); |
---|
| 742 | fail("Problem setting up to use Associator: " + e); |
---|
| 743 | } |
---|
| 744 | |
---|
| 745 | associator.buildAssociations(data); |
---|
| 746 | |
---|
| 747 | return associator.toString(); |
---|
| 748 | } |
---|
| 749 | |
---|
| 750 | /** |
---|
| 751 | * Provides a hook for derived classes to further modify the data. Currently, |
---|
| 752 | * the data is just passed through. |
---|
| 753 | * |
---|
| 754 | * @param data the data to process |
---|
| 755 | * @return the processed data |
---|
| 756 | */ |
---|
| 757 | protected Instances process(Instances data) { |
---|
| 758 | return data; |
---|
| 759 | } |
---|
| 760 | |
---|
| 761 | /** |
---|
| 762 | * Runs a regression test -- this checks that the output of the tested |
---|
| 763 | * object matches that in a reference version. When this test is |
---|
| 764 | * run without any pre-existing reference output, the reference version |
---|
| 765 | * is created. |
---|
| 766 | * |
---|
| 767 | * @throws Exception if something goes wrong |
---|
| 768 | */ |
---|
| 769 | public void testRegression() throws Exception { |
---|
| 770 | int i; |
---|
| 771 | boolean succeeded; |
---|
| 772 | Regression reg; |
---|
| 773 | Instances train; |
---|
| 774 | int type; |
---|
| 775 | |
---|
| 776 | // don't bother if not working correctly |
---|
| 777 | if (m_Tester.hasClasspathProblems()) |
---|
| 778 | return; |
---|
| 779 | |
---|
| 780 | reg = new Regression(this.getClass()); |
---|
| 781 | succeeded = false; |
---|
| 782 | train = null; |
---|
| 783 | |
---|
| 784 | for (i = FIRST_CLASSTYPE; i <= LAST_CLASSTYPE + 1; i++) { |
---|
| 785 | // does the Associator support this type of class at all? |
---|
| 786 | if (!canPredict(i)) |
---|
| 787 | continue; |
---|
| 788 | |
---|
| 789 | if (i == LAST_CLASSTYPE + 1) |
---|
| 790 | type = CheckAssociator.NO_CLASS; |
---|
| 791 | else |
---|
| 792 | type = i; |
---|
| 793 | |
---|
| 794 | train = m_Tester.makeTestDataset( |
---|
| 795 | 42, m_Tester.getNumInstances(), |
---|
| 796 | m_NominalPredictors[i] ? 2 : 0, |
---|
| 797 | m_NumericPredictors[i] ? 1 : 0, |
---|
| 798 | m_StringPredictors[i] ? 1 : 0, |
---|
| 799 | m_DatePredictors[i] ? 1 : 0, |
---|
| 800 | m_RelationalPredictors[i] ? 1 : 0, |
---|
| 801 | 2, |
---|
| 802 | type, |
---|
| 803 | m_multiInstanceHandler); |
---|
| 804 | |
---|
| 805 | try { |
---|
| 806 | m_RegressionResults[i] = useAssociator(train); |
---|
| 807 | succeeded = true; |
---|
| 808 | reg.println(m_RegressionResults[i]); |
---|
| 809 | } |
---|
| 810 | catch (Exception e) { |
---|
| 811 | String msg = e.getMessage().toLowerCase(); |
---|
| 812 | if (msg.indexOf("not in classpath") > -1) |
---|
| 813 | return; |
---|
| 814 | |
---|
| 815 | m_RegressionResults[i] = null; |
---|
| 816 | } |
---|
| 817 | } |
---|
| 818 | |
---|
| 819 | if (!succeeded) { |
---|
| 820 | fail("Problem during regression testing: no successful predictions for any class type"); |
---|
| 821 | } |
---|
| 822 | |
---|
| 823 | try { |
---|
| 824 | String diff = reg.diff(); |
---|
| 825 | if (diff == null) { |
---|
| 826 | System.err.println("Warning: No reference available, creating."); |
---|
| 827 | } else if (!diff.equals("")) { |
---|
| 828 | fail("Regression test failed. Difference:\n" + diff); |
---|
| 829 | } |
---|
| 830 | } |
---|
| 831 | catch (java.io.IOException ex) { |
---|
| 832 | fail("Problem during regression testing.\n" + ex); |
---|
| 833 | } |
---|
| 834 | } |
---|
| 835 | |
---|
| 836 | /** |
---|
| 837 | * tests the listing of the options |
---|
| 838 | */ |
---|
| 839 | public void testListOptions() { |
---|
| 840 | if (m_OptionTester.getOptionHandler() != null) { |
---|
| 841 | if (!m_OptionTester.checkListOptions()) |
---|
| 842 | fail("Options cannot be listed via listOptions."); |
---|
| 843 | } |
---|
| 844 | } |
---|
| 845 | |
---|
| 846 | /** |
---|
| 847 | * tests the setting of the options |
---|
| 848 | */ |
---|
| 849 | public void testSetOptions() { |
---|
| 850 | if (m_OptionTester.getOptionHandler() != null) { |
---|
| 851 | if (!m_OptionTester.checkSetOptions()) |
---|
| 852 | fail("setOptions method failed."); |
---|
| 853 | } |
---|
| 854 | } |
---|
| 855 | |
---|
| 856 | /** |
---|
| 857 | * tests whether the default settings are processed correctly |
---|
| 858 | */ |
---|
| 859 | public void testDefaultOptions() { |
---|
| 860 | if (m_OptionTester.getOptionHandler() != null) { |
---|
| 861 | if (!m_OptionTester.checkDefaultOptions()) |
---|
| 862 | fail("Default options were not processed correctly."); |
---|
| 863 | } |
---|
| 864 | } |
---|
| 865 | |
---|
| 866 | /** |
---|
| 867 | * tests whether there are any remaining options |
---|
| 868 | */ |
---|
| 869 | public void testRemainingOptions() { |
---|
| 870 | if (m_OptionTester.getOptionHandler() != null) { |
---|
| 871 | if (!m_OptionTester.checkRemainingOptions()) |
---|
| 872 | fail("There were 'left-over' options."); |
---|
| 873 | } |
---|
| 874 | } |
---|
| 875 | |
---|
| 876 | /** |
---|
| 877 | * tests the whether the user-supplied options stay the same after setting. |
---|
| 878 | * getting, and re-setting again. |
---|
| 879 | * |
---|
| 880 | * @see #getOptionTester() |
---|
| 881 | */ |
---|
| 882 | public void testCanonicalUserOptions() { |
---|
| 883 | if (m_OptionTester.getOptionHandler() != null) { |
---|
| 884 | if (!m_OptionTester.checkCanonicalUserOptions()) |
---|
| 885 | fail("setOptions method failed"); |
---|
| 886 | } |
---|
| 887 | } |
---|
| 888 | |
---|
| 889 | /** |
---|
| 890 | * tests the resetting of the options to the default ones |
---|
| 891 | */ |
---|
| 892 | public void testResettingOptions() { |
---|
| 893 | if (m_OptionTester.getOptionHandler() != null) { |
---|
| 894 | if (!m_OptionTester.checkSetOptions()) |
---|
| 895 | fail("Resetting of options failed"); |
---|
| 896 | } |
---|
| 897 | } |
---|
| 898 | |
---|
| 899 | /** |
---|
| 900 | * tests for a globalInfo method |
---|
| 901 | */ |
---|
| 902 | public void testGlobalInfo() { |
---|
| 903 | if (!m_GOETester.checkGlobalInfo()) |
---|
| 904 | fail("No globalInfo method"); |
---|
| 905 | } |
---|
| 906 | |
---|
| 907 | /** |
---|
| 908 | * tests the tool tips |
---|
| 909 | */ |
---|
| 910 | public void testToolTips() { |
---|
| 911 | if (!m_GOETester.checkToolTips()) |
---|
| 912 | fail("Tool tips inconsistent"); |
---|
| 913 | } |
---|
| 914 | } |
---|